Miyakogusa Predicted Gene

Lj6g3v0405290.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0405290.1 Non Chatacterized Hit- tr|F6HI02|F6HI02_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,36.05,7e-18,no
description,Armadillo-like helical; IMPORTIN-5 (IMPORTIN SUBUNIT
BETA-3),NULL; IMPORTIN BETA,NULL,gene.g64131.t1.1
         (1296 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS356144 weakly similar to UniRef100_A7PW36 Cluster: Ch...   722   0.0  

>gnl|LJGI|FS356144 weakly similar to UniRef100_A7PW36 Cluster: Chromosome chr8
            scaffold_34, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome chr8 scaffold_34, whole genome
            shotgun sequence - Vitis vinifera (Grape), partial (8%)
          Length = 616

 Score =  722 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                        
Query: 929  gaagaatttgtgaattccatcgagaatgcattgatggatcccagcttgttcctgcttggc 988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  gaagaatttgtgaattccatcgagaatgcattgatggatcccagcttgttcctgcttggc 557

                                                                        
Query: 989  taagtttcttgcctcttaaaaatgatttgattgaagccaaattgatgcatgaacagctca 1048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  taagtttcttgcctcttaaaaatgatttgattgaagccaaattgatgcatgaacagctca 497

                                                                        
Query: 1049 gtttgatggtttcaagatttgataaggatcttttcggacctgctaaccagaacctcgaaa 1108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  gtttgatggtttcaagatttgataaggatcttttcggacctgctaaccagaacctcgaaa 437

                                                                        
Query: 1109 agattattacggtatttattcaggtcattgaggagggtggcaacttagctacacctgaaa 1168
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436  agattattacggtatttattcaggtcattgaggagggtggcaacttagctacacctaaaa 377

                                                                        
Query: 1169 caatcaaccagatgaatgatttgctaacagagcttgcacggcacattcctcaaagtgcct 1228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376  caatcaaccagatgaatgatttgctaacagagcttgcacggcacattcctcaaagtgcct 317

                                                                        
Query: 1229 tggattcaattttagtgtctttgagtgctcaacaacgggatttattattgcctttgctgt 1288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316  tggattcaattttagtgtctttgagtgctcaacaacgggatttattattgcctttgctgt 257

                    
Query: 1289 taccttag 1296
            ||||||||
Sbjct: 256  taccttag 249