Miyakogusa Predicted Gene
- Lj6g3v0247680.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0247680.1 tr|G7JAR7|G7JAR7_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g084310 PE=3
S,91.85,0,no description,Pyridoxal phosphate-dependent transferase,
major region, subdomain 1; SHMT,Serine hyd,CUFF.57679.1
(820 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65969 homologue to UniRef100_A9PL04 Cluster: Serine h... 1312 0.0
gnl|LJGI|TC60222 homologue to UniRef100_A9PL04 Cluster: Serine h... 626 e-179
gnl|LJGI|TC72573 homologue to UniRef100_A9PL04 Cluster: Serine h... 464 e-130
gnl|LJGI|BW604336 homologue to UniRef100_A9PL04 Cluster: Serine ... 373 e-102
>gnl|LJGI|TC65969 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (47%)
Length = 752
Score = 1312 bits (662), Expect = 0.0
Identities = 662/662 (100%)
Strand = Plus / Plus
Query: 1 atggatccggtgaacgactggggcaacacgccgctatcaacggtggacccggagatccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 atggatccggtgaacgactggggcaacacgccgctatcaacggtggacccggagatccac 150
Query: 61 gacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcatagcatcggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcatagcatcggag 210
Query: 121 aatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaacaaatactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaacaaatactcc 270
Query: 181 gaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccagatcgagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccagatcgagaat 330
Query: 241 ctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtggggtgttaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtggggtgttaac 390
Query: 301 gtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtgctccagccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtgctccagccg 450
Query: 361 catgatcgtatcatggggctggatcttccttccggcgggcatttgactcatgggtactac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 catgatcgtatcatggggctggatcttccttccggcgggcatttgactcatgggtactac 510
Query: 421 acctccggcgggaagaagatctcggcgacttcgatttactttgagagtttgccttacaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acctccggcgggaagaagatctcggcgacttcgatttactttgagagtttgccttacaag 570
Query: 481 gtgaatttcagtactgggtatattgactatgataggttggaggagaaggctttggatttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtgaatttcagtactgggtatattgactatgataggttggaggagaaggctttggatttc 630
Query: 541 aggccaaagttgattatctgtggtggtagtgcttaccctagggactgggattatgccagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aggccaaagttgattatctgtggtggtagtgcttaccctagggactgggattatgccagg 690
Query: 601 tttagacaggttgctgataagtgtggtgcacttctgctatgtgatatggctcacattagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tttagacaggttgctgataagtgtggtgcacttctgctatgtgatatggctcacattagt 750
Query: 661 gg 662
||
Sbjct: 751 gg 752
>gnl|LJGI|TC60222 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), complete
Length = 1696
Score = 626 bits (316), Expect = e-179
Identities = 550/628 (87%)
Strand = Plus / Plus
Query: 52 gagatccacgacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcata 111
||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| ||
Sbjct: 133 gagatccacgacctcatcgagaaggagaagcgccgccagtgccgcggcatcgagctaatc 192
Query: 112 gcatcggagaatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaac 171
||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 193 gcatcggagaatttcacctccttcgccgtcatcgaagctctcggctccgccctcaccaac 252
Query: 172 aaatactccgaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccag 231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 253 aaatactccgagggcatgcccggtaaccgctactacggcggcaacgagttcatcgaccag 312
Query: 232 atcgagaatctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtgg 291
|||||||||||||||||||||||||| || || |||||||| |||||||| || |||
Sbjct: 313 atcgagaatctctgccgctctcgcgcgcttcaagccttccatctcgacgctgcaaaatgg 372
Query: 292 ggtgttaacgtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtg 351
|| |||||||||||||| || ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 373 ggcgttaacgtccagccctactccggctcaccggccaacttcgccgcatacaccgccgtg 432
Query: 352 ctccagccgcatgatcgtatcatggggctggatcttccttccggcgggcatttgactcat 411
||| | || || || || ||||||||| ||||||| || ||||| || ||| | || |||
Sbjct: 433 ctcaaccctcacgaccgcatcatggggttggatctcccctccggtggacatctcacccat 492
Query: 412 gggtactacacctccggcgggaagaagatctcggcgacttcgatttactttgagagtttg 471
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 493 gggtactatacctccggcgggaagaagatctctgcgacttcgatttactttgagagtctt 552
Query: 472 ccttacaaggtgaatttcagtactgggtatattgactatgataggttggaggagaaggct 531
|| || |||||||| | || || ||||| ||||| || ||| ||||||||||||||||
Sbjct: 553 ccgtataaggtgaactccaccaccgggtacattgattacgatcggttggaggagaaggcg 612
Query: 532 ttggatttcaggccaaagttgattatctgtggtggtagtgcttaccctagggactgggat 591
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 613 ttggatttcaggcctaagttgattatctgcggtggcagtgcttaccctagggattgggat 672
Query: 592 tatgccaggtttagacaggttgctgataagtgtggtgcacttctgctatgtgatatggct 651
|| | || || |||||||||| |||||||| || ||| |||| |||||||||||
Sbjct: 673 tacagacgcttcagggaggttgctgacaagtgtggcgcgcttttgctctgtgatatggcg 732
Query: 652 cacattagtggccttgttgctgctcagg 679
||||||||||||||||||||||||||||
Sbjct: 733 cacattagtggccttgttgctgctcagg 760
>gnl|LJGI|TC72573 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (33%)
Length = 625
Score = 464 bits (234), Expect = e-130
Identities = 369/414 (89%)
Strand = Plus / Plus
Query: 52 gagatccacgacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcata 111
||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| ||
Sbjct: 212 gagatccacgacctcatcgagaaggagaagcgccgccagtgccgcggcatcgagctaatc 271
Query: 112 gcatcggagaatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaac 171
||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 272 gcatcggagaatttcacctccttcgccgtcatcgaagctctcggctccgccctcaccaac 331
Query: 172 aaatactccgaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccag 231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 332 aaatactccgagggcatgcccggtaaccgctactacggcggcaacgagttcatcgaccag 391
Query: 232 atcgagaatctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtgg 291
|||||||||||||||||||||||||| || || |||||||| |||||||| || |||
Sbjct: 392 atcgagaatctctgccgctctcgcgcgcttcaagccttccatctcgacgctgcaaaatgg 451
Query: 292 ggtgttaacgtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtg 351
|| |||||||||||||| || ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 452 ggcgttaacgtccagccctactccggctcaccggccaacttcgccgcatacaccgccgtg 511
Query: 352 ctccagccgcatgatcgtatcatggggctggatcttccttccggcgggcatttgactcat 411
||| | || || || || ||||||||| ||||||| || ||||| || ||| | || |||
Sbjct: 512 ctcaaccctcacgaccgcatcatggggttggatctcccctccggtggacatctcacccat 571
Query: 412 gggtactacacctccggcgggaagaagatctcggcgacttcgatttactttgag 465
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 572 gggtactatacctccggcgggaagaagatctctgcgacttcgatttactttgag 625
>gnl|LJGI|BW604336 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (28%)
Length = 528
Score = 373 bits (188), Expect = e-102
Identities = 305/344 (88%)
Strand = Plus / Plus
Query: 52 gagatccacgacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcata 111
||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct: 177 gagatccacgacctcatcgagagggagaagcgccgccagtgccgcggcatcgagctaatc 236
Query: 112 gcatcggagaatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaac 171
||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 237 gcatcggagaatttcacctccttcgccgtcatcgaagctctcggctccgccctcaccaac 296
Query: 172 aaatactccgaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccag 231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 297 aaatactccgagggcatgcccggtaaccgctactacggcggcaacgagttcatcgaccag 356
Query: 232 atcgagaatctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtgg 291
|||||||||||||||||||||||||| || || |||||||| |||||||| || |||
Sbjct: 357 atcgagaatctctgccgctctcgcgcgcttcaagccttccatctcgacgctgcaaaatgg 416
Query: 292 ggtgttaacgtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtg 351
|| |||||||||||||| || ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 417 ggcgttaacgtccagccctactccggctcaccggccaacttcgccgcatacaccgccgtg 476
Query: 352 ctccagccgcatgatcgtatcatggggctggatcttccttccgg 395
||| | || || || || ||||||||| ||||||| || |||||
Sbjct: 477 ctcaaccctcacgaccgcatcatggggttggatctcccctccgg 520