Miyakogusa Predicted Gene
- Lj6g3v0247670.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0247670.1 tr|G7JAR7|G7JAR7_MEDTR Serine
hydroxymethyltransferase OS=Medicago truncatula GN=MTR_3g084310 PE=3
S,94.48,0,no description,Pyridoxal phosphate-dependent transferase,
major region, subdomain 1; no description,,CUFF.57678.1
(1419 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60222 homologue to UniRef100_A9PL04 Cluster: Serine h... 1501 0.0
gnl|LJGI|TC65969 homologue to UniRef100_A9PL04 Cluster: Serine h... 1312 0.0
gnl|LJGI|TC63717 homologue to UniRef100_A7Q734 Cluster: Serine h... 959 0.0
gnl|LJGI|TC72573 homologue to UniRef100_A9PL04 Cluster: Serine h... 464 e-130
gnl|LJGI|BW604336 homologue to UniRef100_A9PL04 Cluster: Serine ... 373 e-102
gnl|LJGI|TC74939 homologue to UniRef100_A9PL04 Cluster: Serine h... 254 1e-66
gnl|LJGI|AV770643 UniRef100_A3CB05 Cluster: Serine hydroxymethyl... 54 2e-06
>gnl|LJGI|TC60222 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), complete
Length = 1696
Score = 1501 bits (757), Expect = 0.0
Identities = 1213/1365 (88%)
Strand = Plus / Plus
Query: 52 gagatccacgacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcata 111
||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| ||
Sbjct: 133 gagatccacgacctcatcgagaaggagaagcgccgccagtgccgcggcatcgagctaatc 192
Query: 112 gcatcggagaatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaac 171
||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 193 gcatcggagaatttcacctccttcgccgtcatcgaagctctcggctccgccctcaccaac 252
Query: 172 aaatactccgaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccag 231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 253 aaatactccgagggcatgcccggtaaccgctactacggcggcaacgagttcatcgaccag 312
Query: 232 atcgagaatctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtgg 291
|||||||||||||||||||||||||| || || |||||||| |||||||| || |||
Sbjct: 313 atcgagaatctctgccgctctcgcgcgcttcaagccttccatctcgacgctgcaaaatgg 372
Query: 292 ggtgttaacgtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtg 351
|| |||||||||||||| || ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 373 ggcgttaacgtccagccctactccggctcaccggccaacttcgccgcatacaccgccgtg 432
Query: 352 ctccagccgcatgatcgtatcatggggctggatcttccttccggcgggcatttgactcat 411
||| | || || || || ||||||||| ||||||| || ||||| || ||| | || |||
Sbjct: 433 ctcaaccctcacgaccgcatcatggggttggatctcccctccggtggacatctcacccat 492
Query: 412 gggtactacacctccggcgggaagaagatctcggcgacttcgatttactttgagagtttg 471
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 493 gggtactatacctccggcgggaagaagatctctgcgacttcgatttactttgagagtctt 552
Query: 472 ccttacaaggtgaatttcagtactgggtatattgactatgataggttggaggagaaggct 531
|| || |||||||| | || || ||||| ||||| || ||| ||||||||||||||||
Sbjct: 553 ccgtataaggtgaactccaccaccgggtacattgattacgatcggttggaggagaaggcg 612
Query: 532 ttggatttcaggccaaagttgattatctgtggtggtagtgcttaccctagggactgggat 591
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 613 ttggatttcaggcctaagttgattatctgcggtggcagtgcttaccctagggattgggat 672
Query: 592 tatgccaggtttagacaggttgctgataagtgtggtgcacttctgctatgtgatatggct 651
|| | || || |||||||||| |||||||| || ||| |||| |||||||||||
Sbjct: 673 tacagacgcttcagggaggttgctgacaagtgtggcgcgcttttgctctgtgatatggcg 732
Query: 652 cacattagtggccttgttgctgctcaggaagcaaataacccatttgagtactgtgacatt 711
||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||
Sbjct: 733 cacattagtggccttgttgctgctcaggaagttaatgatccctttgagtactgtgacata 792
Query: 712 gtcacaacaacaacacacaagagcttgagggggcccagggcgggtatgatcttctaccgg 771
||||||||||| || ||||| ||||||||||| || ||||| ||||||||||||||||||
Sbjct: 793 gtcacaacaaccacccacaaaagcttgaggggacctagggctggtatgatcttctaccgg 852
Query: 772 aagggacctaaaccgccaaaaaagggccagccggagaatgcagggtatgattttgaagac 831
|||||||||||||| | || ||||||||||| ||| ||||| || || ||||| |||
Sbjct: 853 aagggacctaaaccagccaagaagggccagcccgagggtgcagtttacgagtttgaggac 912
Query: 832 aagatcaactttgcagtcttcccctcccttcagggtggtcctcacaaccaccagatcggc 891
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 913 aaaatcaactttgcagtcttcccctcccttcagggtggtcctcacaatcaccagattggt 972
Query: 892 gcccttgctgtcgctttgaaacaggccatgacacctgggttcaaggcatatgccaagcaa 951
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 973 gcccttgctgtcgctttgaaacagtccatgacacctgggttcaaggcatatgccaagcaa 1032
Query: 952 gttaaggccaatgcagttgctattggaaattacttgatgagcaaaggttacagccttgtc 1011
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1033 gttaaggccaatgcagttgccattggaaattacttgatgagcaaaggatacagtcttgtc 1092
Query: 1012 actggaggaactgagaaccatcttgtcttgtgggatcttcgacctctcggattgaccggc 1071
|| | |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct: 1093 accagtggaactgagaaccaccttgtcttgtgggatctccggcctcttggattgaccggc 1152
Query: 1072 aataaggtggagaaactttgtgacctctgcaacattactgtgaacaaaaatgctgttttt 1131
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct: 1153 aataaggtggagaaactttgtgacctctgtagcattacagtgaacaaaaatgctgttttt 1212
Query: 1132 ggtgatagcagtgccttggctcctggaggagtaagagttggagccccagctatgacttcc 1191
|||||||||||||||||||||||||||||||| ||||||| || ||||| ||||| ||
Sbjct: 1213 ggtgatagcagtgccttggctcctggaggagttcgagttggtgctccagccatgacctct 1272
Query: 1192 aggggcttggttgagaaggactttgaacagatcggagagttccttcaccgtgcagtgtct 1251
|| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||
Sbjct: 1273 agaggcttggttgagaaggactttgagcagattggagagttcctccaccgtgctgtgact 1332
Query: 1252 ctcacgctggagatccagaacgagtatggcaaacttttgaaggatttcaacaagggcttg 1311
||||| || || |||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct: 1333 ctcacactcgacatccagaaggagtatggcaaacttctgaaggattttaacaagggcttg 1392
Query: 1312 gtgaacaataaggctattgaagaactcaaagctgatgttgagaagttctcagcctcattc 1371
|||||||| |||||| ||||||| ||||| |||||||||||||||||||| |||||||
Sbjct: 1393 gtgaacaacaaggctcttgaagatctcaaggctgatgttgagaagttctcttcctcattt 1452
Query: 1372 gatatgcctggattcctagtatctgagttgaagtacaaggattag 1416
|| |||||||||||||| | |||||| |||||||| ||||||||
Sbjct: 1453 gacatgcctggattcctgatgtctgagatgaagtaccaggattag 1497
>gnl|LJGI|TC65969 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (47%)
Length = 752
Score = 1312 bits (662), Expect = 0.0
Identities = 662/662 (100%)
Strand = Plus / Plus
Query: 1 atggatccggtgaacgactggggcaacacgccgctatcaacggtggacccggagatccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 atggatccggtgaacgactggggcaacacgccgctatcaacggtggacccggagatccac 150
Query: 61 gacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcatagcatcggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcatagcatcggag 210
Query: 121 aatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaacaaatactcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaacaaatactcc 270
Query: 181 gaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccagatcgagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccagatcgagaat 330
Query: 241 ctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtggggtgttaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtggggtgttaac 390
Query: 301 gtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtgctccagccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtgctccagccg 450
Query: 361 catgatcgtatcatggggctggatcttccttccggcgggcatttgactcatgggtactac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 catgatcgtatcatggggctggatcttccttccggcgggcatttgactcatgggtactac 510
Query: 421 acctccggcgggaagaagatctcggcgacttcgatttactttgagagtttgccttacaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acctccggcgggaagaagatctcggcgacttcgatttactttgagagtttgccttacaag 570
Query: 481 gtgaatttcagtactgggtatattgactatgataggttggaggagaaggctttggatttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtgaatttcagtactgggtatattgactatgataggttggaggagaaggctttggatttc 630
Query: 541 aggccaaagttgattatctgtggtggtagtgcttaccctagggactgggattatgccagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aggccaaagttgattatctgtggtggtagtgcttaccctagggactgggattatgccagg 690
Query: 601 tttagacaggttgctgataagtgtggtgcacttctgctatgtgatatggctcacattagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tttagacaggttgctgataagtgtggtgcacttctgctatgtgatatggctcacattagt 750
Query: 661 gg 662
||
Sbjct: 751 gg 752
>gnl|LJGI|TC63717 homologue to UniRef100_A7Q734 Cluster: Serine
hydroxymethyltransferase; n=1; Vitis vinifera|Rep: Serine
hydroxymethyltransferase - Vitis vinifera (Grape),
partial (65%)
Length = 693
Score = 959 bits (484), Expect = 0.0
Identities = 484/484 (100%)
Strand = Plus / Plus
Query: 936 ggcatatgccaagcaagttaaggccaatgcagttgctattggaaattacttgatgagcaa 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcatatgccaagcaagttaaggccaatgcagttgctattggaaattacttgatgagcaa 60
Query: 996 aggttacagccttgtcactggaggaactgagaaccatcttgtcttgtgggatcttcgacc 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggttacagccttgtcactggaggaactgagaaccatcttgtcttgtgggatcttcgacc 120
Query: 1056 tctcggattgaccggcaataaggtggagaaactttgtgacctctgcaacattactgtgaa 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctcggattgaccggcaataaggtggagaaactttgtgacctctgcaacattactgtgaa 180
Query: 1116 caaaaatgctgtttttggtgatagcagtgccttggctcctggaggagtaagagttggagc 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caaaaatgctgtttttggtgatagcagtgccttggctcctggaggagtaagagttggagc 240
Query: 1176 cccagctatgacttccaggggcttggttgagaaggactttgaacagatcggagagttcct 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cccagctatgacttccaggggcttggttgagaaggactttgaacagatcggagagttcct 300
Query: 1236 tcaccgtgcagtgtctctcacgctggagatccagaacgagtatggcaaacttttgaagga 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaccgtgcagtgtctctcacgctggagatccagaacgagtatggcaaacttttgaagga 360
Query: 1296 tttcaacaagggcttggtgaacaataaggctattgaagaactcaaagctgatgttgagaa 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttcaacaagggcttggtgaacaataaggctattgaagaactcaaagctgatgttgagaa 420
Query: 1356 gttctcagcctcattcgatatgcctggattcctagtatctgagttgaagtacaaggatta 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttctcagcctcattcgatatgcctggattcctagtatctgagttgaagtacaaggatta 480
Query: 1416 ggtg 1419
||||
Sbjct: 481 ggtg 484
>gnl|LJGI|TC72573 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (33%)
Length = 625
Score = 464 bits (234), Expect = e-130
Identities = 369/414 (89%)
Strand = Plus / Plus
Query: 52 gagatccacgacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcata 111
||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||| ||
Sbjct: 212 gagatccacgacctcatcgagaaggagaagcgccgccagtgccgcggcatcgagctaatc 271
Query: 112 gcatcggagaatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaac 171
||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 272 gcatcggagaatttcacctccttcgccgtcatcgaagctctcggctccgccctcaccaac 331
Query: 172 aaatactccgaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccag 231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 332 aaatactccgagggcatgcccggtaaccgctactacggcggcaacgagttcatcgaccag 391
Query: 232 atcgagaatctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtgg 291
|||||||||||||||||||||||||| || || |||||||| |||||||| || |||
Sbjct: 392 atcgagaatctctgccgctctcgcgcgcttcaagccttccatctcgacgctgcaaaatgg 451
Query: 292 ggtgttaacgtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtg 351
|| |||||||||||||| || ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 452 ggcgttaacgtccagccctactccggctcaccggccaacttcgccgcatacaccgccgtg 511
Query: 352 ctccagccgcatgatcgtatcatggggctggatcttccttccggcgggcatttgactcat 411
||| | || || || || ||||||||| ||||||| || ||||| || ||| | || |||
Sbjct: 512 ctcaaccctcacgaccgcatcatggggttggatctcccctccggtggacatctcacccat 571
Query: 412 gggtactacacctccggcgggaagaagatctcggcgacttcgatttactttgag 465
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 572 gggtactatacctccggcgggaagaagatctctgcgacttcgatttactttgag 625
>gnl|LJGI|BW604336 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (28%)
Length = 528
Score = 373 bits (188), Expect = e-102
Identities = 305/344 (88%)
Strand = Plus / Plus
Query: 52 gagatccacgacctcatcgagcacgagaagcgtcgccaatgccgcggcatcgagctcata 111
||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct: 177 gagatccacgacctcatcgagagggagaagcgccgccagtgccgcggcatcgagctaatc 236
Query: 112 gcatcggagaatttcacctccttcgccgtcatccaagctcttggcagcgccctcaccaac 171
||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 237 gcatcggagaatttcacctccttcgccgtcatcgaagctctcggctccgccctcaccaac 296
Query: 172 aaatactccgaaggcatgcccggtaaccgctactacggcggcaatgagttcatcgaccag 231
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 297 aaatactccgagggcatgcccggtaaccgctactacggcggcaacgagttcatcgaccag 356
Query: 232 atcgagaatctctgccgctctcgcgctctccaggccttccacctcgacgccgccgcgtgg 291
|||||||||||||||||||||||||| || || |||||||| |||||||| || |||
Sbjct: 357 atcgagaatctctgccgctctcgcgcgcttcaagccttccatctcgacgctgcaaaatgg 416
Query: 292 ggtgttaacgtccagccttattccggttctccggcgaatttcgccgcctacaccgccgtg 351
|| |||||||||||||| || ||||| || ||||| || |||||||| ||||||||||||
Sbjct: 417 ggcgttaacgtccagccctactccggctcaccggccaacttcgccgcatacaccgccgtg 476
Query: 352 ctccagccgcatgatcgtatcatggggctggatcttccttccgg 395
||| | || || || || ||||||||| ||||||| || |||||
Sbjct: 477 ctcaaccctcacgaccgcatcatggggttggatctcccctccgg 520
>gnl|LJGI|TC74939 homologue to UniRef100_A9PL04 Cluster: Serine
hydroxymethyltransferase; n=1; Populus tremuloides|Rep:
Serine hydroxymethyltransferase - Populus tremuloides
(Quaking aspen), partial (17%)
Length = 656
Score = 254 bits (128), Expect = 1e-66
Identities = 212/240 (88%)
Strand = Plus / Plus
Query: 1177 ccagctatgacttccaggggcttggttgagaaggactttgaacagatcggagagttcctt 1236
||||| ||||| || || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 97 ccagccatgacctctagaggcttggttgagaaggactttgagcagattggagagttcctc 156
Query: 1237 caccgtgcagtgtctctcacgctggagatccagaacgagtatggcaaacttttgaaggat 1296
|||||||| ||| ||||||| || || |||||||| ||||||||||||||| ||||||||
Sbjct: 157 caccgtgctgtgactctcacactcgacatccagaaggagtatggcaaacttctgaaggat 216
Query: 1297 ttcaacaagggcttggtgaacaataaggctattgaagaactcaaagctgatgttgagaag 1356
|| |||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 217 tttaacaagggcttggtgaacaacaaggctcttgaagatctcaaggctgatgttgagaag 276
Query: 1357 ttctcagcctcattcgatatgcctggattcctagtatctgagttgaagtacaaggattag 1416
||||| ||||||| || |||||||||||||| | |||||| |||||||| ||||||||
Sbjct: 277 ttctcttcctcatttgacatgcctggattcctgatgtctgagatgaagtaccaggattag 336
>gnl|LJGI|AV770643 UniRef100_A3CB05 Cluster: Serine hydroxymethyltransferase; n=2; Oryza
sativa Japonica Group|Rep: Serine, partial (3%)
Length = 340
Score = 54.0 bits (27), Expect = 2e-06
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1195 ggcttggttgagaaggactttga-acagatcggagagttccttcacc 1240
||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 337 ggcttggttgagaaggactttgagccagattggagagttcctccacc 291