Miyakogusa Predicted Gene
- Lj6g3v0183450.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0183450.1 CUFF.57765.1
(406 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72755 similar to UniRef100_Q8H9E1 Cluster: Extensin; ... 103 8e-22
gnl|LJGI|BW594926 similar to UniRef100_Q43687 Cluster: Extensin-... 64 7e-10
gnl|LJGI|TC80941 similar to UniRef100_Q39865 Cluster: Hydroxypro... 64 7e-10
gnl|LJGI|TC77194 similar to UniRef100_Q41707 Cluster: Extensin c... 64 7e-10
gnl|LJGI|TC68696 similar to UniRef100_O65760 Cluster: Extensin; ... 64 7e-10
gnl|LJGI|TC82766 similar to UniRef100_A7P093 Cluster: Chromosome... 60 1e-08
gnl|LJGI|AI967699 homologue to UniRef100_O65760 Cluster: Extensi... 56 2e-07
gnl|LJGI|TC81623 weakly similar to UniRef100_A7PRJ4 Cluster: Chr... 52 3e-06
>gnl|LJGI|TC72755 similar to UniRef100_Q8H9E1 Cluster: Extensin; n=1; Solanum
tuberosum|Rep: Extensin - Solanum tuberosum (Potato),
partial (24%)
Length = 521
Score = 103 bits (52), Expect = 8e-22
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 315 aagtctcctccaccaccagtttacatctatgcttctccaccaccaccagtgtacaattaa 374
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||
Sbjct: 55 aagtctcctccaccaccagtttacatttatgcttcaccaccaccacccgtgtaccattaa 114
Query: 375 gcttgaaatgcggattcactatttgggataaa 406
|| | |||||||||| | | ||||| ||||||
Sbjct: 115 gcctaaaatgcggatgccccatttgtgataaa 146
>gnl|LJGI|BW594926 similar to UniRef100_Q43687 Cluster: Extensin-like protein; n=1;
Vigna unguiculata|Rep: Extensin-like protein - Vigna
unguiculata (Cowpea), partial (52%)
Length = 486
Score = 63.9 bits (32), Expect = 7e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 321 cctccaccaccagtttacatctatgcttctccaccaccaccagtgtacaattaagcttga 380
||||| |||||||||||||| |||||||| ||||||||||| | ||||| |||||| |
Sbjct: 402 cctcccccaccagtttacatttatgcttccccaccaccaccgatctacaagtaagctcgg 461
Query: 381 aatgcgga 388
||||||||
Sbjct: 462 aatgcgga 469
>gnl|LJGI|TC80941 similar to UniRef100_Q39865 Cluster: Hydroxyproline-rich
glycoprotein; n=1; Glycine max|Rep: Hydroxyproline-rich
glycoprotein - Glycine max (Soybean), partial (38%)
Length = 641
Score = 63.9 bits (32), Expect = 7e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 321 cctccaccaccagtttacatctatgcttctccaccaccaccagtgtacaattaagcttga 380
||||| |||||||||||||| |||||||| ||||||||||| | ||||| |||||| |
Sbjct: 153 cctcccccaccagtttacatttatgcttccccaccaccaccgatctacaagtaagctcgg 212
Query: 381 aatgcgga 388
||||||||
Sbjct: 213 aatgcgga 220
>gnl|LJGI|TC77194 similar to UniRef100_Q41707 Cluster: Extensin class 1 protein
precursor; n=2; Vigna unguiculata|Rep: Extensin class 1
protein precursor - Vigna unguiculata (Cowpea), partial
(41%)
Length = 895
Score = 63.9 bits (32), Expect = 7e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 321 cctccaccaccagtttacatctatgcttctccaccaccaccagtgtacaattaagcttga 380
||||| |||||||||||||| |||||||| ||||||||||| | ||||| |||||| |
Sbjct: 566 cctcccccaccagtttacatttatgcttccccaccaccaccgatctacaagtaagctcgg 625
Query: 381 aatgcgga 388
||||||||
Sbjct: 626 aatgcgga 633
>gnl|LJGI|TC68696 similar to UniRef100_O65760 Cluster: Extensin; n=1; Cicer
arietinum|Rep: Extensin - Cicer arietinum (Chickpea)
(Garbanzo), partial (52%)
Length = 712
Score = 63.9 bits (32), Expect = 7e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 321 cctccaccaccagtttacatctatgcttctccaccaccaccagtgtacaattaagcttga 380
||||| |||||||||||||| |||||||| ||||||||||| | ||||| |||||| |
Sbjct: 268 cctcccccaccagtttacatttatgcttccccaccaccaccgatctacaagtaagctcgg 327
Query: 381 aatgcgga 388
||||||||
Sbjct: 328 aatgcgga 335
>gnl|LJGI|TC82766 similar to UniRef100_A7P093 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (40%)
Length = 1247
Score = 60.0 bits (30), Expect = 1e-08
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 21 aagccatttgcttatgcatcaaagaagcactttaaagaatgtgaaaagtccaaaccttcc 80
|||||||||||||| || || |||||||| ||| |||||||||| ||| | || |||||
Sbjct: 414 aagccatttgcttacgcttcgaagaagca-tttgaagaatgtgataagcctaagccttca 472
Query: 81 ccaactccttacta 94
||||||||||||||
Sbjct: 473 ccaactccttacta 486
>gnl|LJGI|AI967699 homologue to UniRef100_O65760 Cluster: Extensin; n=1; Cicer
arietinum|Rep: Extensin - Cicer arietinum (Chickpea)
(Garbanzo), partial (21%)
Length = 239
Score = 56.0 bits (28), Expect = 2e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 321 cctccaccaccagtttacatctatgcttctccaccaccaccagtgtacaattaagcttga 380
||||| |||||||| ||||| |||||||| ||||||||||| | ||||| |||||| |
Sbjct: 127 cctcccccaccagtgtacatttatgcttccccaccaccaccgatctacaagtaagctcgg 186
Query: 381 aatgcgga 388
||||||||
Sbjct: 187 aatgcgga 194
>gnl|LJGI|TC81623 weakly similar to UniRef100_A7PRJ4 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 551
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 183 cctccttattattacaagtctccacctccaccatcacc 220
||||| |||||||||||||| ||||| |||||||||||
Sbjct: 20 cctccatattattacaagtcaccacccccaccatcacc 57