Miyakogusa Predicted Gene

Lj6g3v0144960.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0144960.1 Non Chatacterized Hit- tr|I1QER6|I1QER6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,30.03,8e-18,seg,NULL,CUFF.57558.1
         (2922 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP084882                                                     184   2e-45
gnl|LJGI|AV779627                                                      90   9e-17
gnl|LJGI|DC597931 weakly similar to UniRef100_A7QNS6 Cluster: Ch...    58   3e-07

>gnl|LJGI|BP084882 
          Length = 101

 Score =  184 bits (93), Expect = 2e-45
 Identities = 100/101 (99%), Gaps = 1/101 (0%)
 Strand = Plus / Plus

                                                                       
Query: 368 ttcaaaataactgttctgatggaggtggattaactgaacttgagaaactattcaagcaaa 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttcaaaataactgttctgatggaggtggattaactgaacttgagaaactattcaagcaaa 60

                                                    
Query: 428 agacattcactagatcagaga-ttgatcatttgacagaact 467
           ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61  agacattcactagatcagagagttgatcatttgacagaact 101


>gnl|LJGI|AV779627 
          Length = 516

 Score = 89.7 bits (45), Expect = 9e-17
 Identities = 114/137 (83%)
 Strand = Plus / Plus

                                                                       
Query: 351 agtaggtgaaagtagtgttcaaaataactgttctgatggaggtggattaactgaacttga 410
           |||||||||||||  |||||||| ||| ||| |||||||| |||||||||||||||||||
Sbjct: 367 agtaggtgaaagtgatgttcaaattaattgtgctgatggaagtggattaactgaacttga 426

                                                                       
Query: 411 gaaactattcaagcaaaagacattcactagatcagagattgatcatttgacagaactctt 470
           ||| ||||| ||||| | ||| || || ||||| ||||  |||||  |||| | |||  |
Sbjct: 427 gaagctattgaagcagatgacttttaccagatctgagagggatcaactgactgcacttat 486

                            
Query: 471 gcgttcaagaactgtgg 487
           |||| ||||||||||||
Sbjct: 487 gcgtacaagaactgtgg 503



 Score = 61.9 bits (31), Expect = 2e-08
 Identities = 97/117 (82%), Gaps = 4/117 (3%)
 Strand = Plus / Plus

                                                                       
Query: 118 ctcagaaaccctaccaggaacaacggttggctctcgaagctcgttg---atcccgc-tca 173
           ||||||||||||| ||||||||| |||||| |||||||||| || |   ||||||| |||
Sbjct: 145 ctcagaaaccctaacaggaacaagggttggttctcgaagctggtggtggatcccgcgtca 204

                                                                    
Query: 174 gagactcatcacttatagcgccaacagcctcttctcctccgttttccgcaaccgcct 230
            || ||||||||| | |||||  ||  ||||||||||||  |||||||||| |||||
Sbjct: 205 caggctcatcactcacagcgctcactccctcttctcctctcttttccgcaagcgcct 261


>gnl|LJGI|DC597931 weakly similar to UniRef100_A7QNS6 Cluster: Chromosome undetermined
            scaffold_134, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_134, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (20%)
          Length = 574

 Score = 58.0 bits (29), Expect = 3e-07
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 1267 acagcctcaaaaatactgcagcaacttgatagattggtttc 1307
            ||||| |||||||||| ||||||||||||||| ||||||||
Sbjct: 345  acagcttcaaaaatacagcagcaacttgataggttggtttc 385