Miyakogusa Predicted Gene
- Lj6g3v0098580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0098580.1 Non Chatacterized Hit- tr|K3YME3|K3YME3_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,95.07,0,THIOREDOXIN-LIKE PROTEN 4A, 4B,mRNA splicing factor,
thioredoxin-like U5 snRNP; Thioredoxin-like,Thi,CUFF.57499.1
(429 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC65667 homologue to UniRef100_A7NWV6 Cluster: Chromoso... 850 0.0
gnl|LJGI|TC58642 homologue to UniRef100_A7NWV6 Cluster: Chromoso... 850 0.0
gnl|LJGI|TC76479 homologue to UniRef100_A7NWV6 Cluster: Chromoso... 644 0.0
gnl|LJGI|BP079042 homologue to UniRef100_A7NWV6 Cluster: Chromos... 268 3e-71
>gnl|LJGI|TC65667 homologue to UniRef100_A7NWV6 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=2; core
eudicotyledons|Rep: Chromosome chr5 scaffold_2, whole
genome shotgun sequence - Vitis vinifera (Grape),
complete
Length = 754
Score = 850 bits (429), Expect = 0.0
Identities = 429/429 (100%)
Strand = Plus / Plus
Query: 1 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaattcttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaattcttgct 112
Query: 61 gaagaggagcgtctcgttgtcatccgcttcggccacgattgggatgagacttgcatgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gaagaggagcgtctcgttgtcatccgcttcggccacgattgggatgagacttgcatgcag 172
Query: 121 atggatgaggtgctggcatcggttgcggagacgataaagaactttgctgtgatatacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atggatgaggtgctggcatcggttgcggagacgataaagaactttgctgtgatatacctt 232
Query: 181 gtggacatcacggaggttcctgatttcaacaccatgtatgagctttacgatccctccact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gtggacatcacggaggttcctgatttcaacaccatgtatgagctttacgatccctccact 292
Query: 241 gttatgttcttcttcaggaacaagcacatcatgatagaccttggaactggaaacaacaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gttatgttcttcttcaggaacaagcacatcatgatagaccttggaactggaaacaacaac 352
Query: 301 aagatcaactgggctatgaaggacaagcaggagttcattgacatcattgagaccatctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aagatcaactgggctatgaaggacaagcaggagttcattgacatcattgagaccatctac 412
Query: 361 aggggtgcaaggaagggacgtggtctcgtcattgcccccaaagattactccaccaagtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aggggtgcaaggaagggacgtggtctcgtcattgcccccaaagattactccaccaagtac 472
Query: 421 agatactaa 429
|||||||||
Sbjct: 473 agatactaa 481
>gnl|LJGI|TC58642 homologue to UniRef100_A7NWV6 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=2; core
eudicotyledons|Rep: Chromosome chr5 scaffold_2, whole
genome shotgun sequence - Vitis vinifera (Grape),
complete
Length = 803
Score = 850 bits (429), Expect = 0.0
Identities = 429/429 (100%)
Strand = Plus / Plus
Query: 1 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaattcttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaattcttgct 117
Query: 61 gaagaggagcgtctcgttgtcatccgcttcggccacgattgggatgagacttgcatgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gaagaggagcgtctcgttgtcatccgcttcggccacgattgggatgagacttgcatgcag 177
Query: 121 atggatgaggtgctggcatcggttgcggagacgataaagaactttgctgtgatatacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atggatgaggtgctggcatcggttgcggagacgataaagaactttgctgtgatatacctt 237
Query: 181 gtggacatcacggaggttcctgatttcaacaccatgtatgagctttacgatccctccact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtggacatcacggaggttcctgatttcaacaccatgtatgagctttacgatccctccact 297
Query: 241 gttatgttcttcttcaggaacaagcacatcatgatagaccttggaactggaaacaacaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gttatgttcttcttcaggaacaagcacatcatgatagaccttggaactggaaacaacaac 357
Query: 301 aagatcaactgggctatgaaggacaagcaggagttcattgacatcattgagaccatctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aagatcaactgggctatgaaggacaagcaggagttcattgacatcattgagaccatctac 417
Query: 361 aggggtgcaaggaagggacgtggtctcgtcattgcccccaaagattactccaccaagtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aggggtgcaaggaagggacgtggtctcgtcattgcccccaaagattactccaccaagtac 477
Query: 421 agatactaa 429
|||||||||
Sbjct: 478 agatactaa 486
>gnl|LJGI|TC76479 homologue to UniRef100_A7NWV6 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=2; core
eudicotyledons|Rep: Chromosome chr5 scaffold_2, whole
genome shotgun sequence - Vitis vinifera (Grape),
complete
Length = 669
Score = 644 bits (325), Expect = 0.0
Identities = 403/429 (93%)
Strand = Plus / Plus
Query: 1 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaattcttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaatccttgct 124
Query: 61 gaagaggagcgtctcgttgtcatccgcttcggccacgattgggatgagacttgcatgcag 120
|| || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 125 gaggaagagcgtcttgttgtcatccgcttcggtcacgattgggatgagacctgcatgcag 184
Query: 121 atggatgaggtgctggcatcggttgcggagacgataaagaactttgctgtgatatacctt 180
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 185 atggatgaggtgctggcatcggttgcggagacaataaaaaactttgctgtaatatacctt 244
Query: 181 gtggacatcacggaggttcctgatttcaacaccatgtatgagctttacgatccctccact 240
||||||||||||||||| || |||||||| |||||||||||||| || || |||||||||
Sbjct: 245 gtggacatcacggaggtaccggatttcaataccatgtatgagctgtatgacccctccact 304
Query: 241 gttatgttcttcttcaggaacaagcacatcatgatagaccttggaactggaaacaacaac 300
|||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 305 gttatgtttttcttcagaaacaagcacatcatgatagatcttggcactggtaacaacaac 364
Query: 301 aagatcaactgggctatgaaggacaagcaggagttcattgacatcattgagaccatctac 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 aagatcaattgggctatgaaggacaagcaggagttcattgacatcattgagaccgtctac 424
Query: 361 aggggtgcaaggaagggacgtggtctcgtcattgcccccaaagattactccaccaagtac 420
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agaggggcaaggaagggacgtggtctcgtcattgcccccaaagattactccaccaagtac 484
Query: 421 agatactaa 429
| ||||||
Sbjct: 485 cgttactaa 493
>gnl|LJGI|BP079042 homologue to UniRef100_A7NWV6 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=2; core
eudicotyledons|Rep: Chromosome chr5 scaffold_2, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (68%)
Length = 523
Score = 268 bits (135), Expect = 3e-71
Identities = 162/171 (94%)
Strand = Plus / Minus
Query: 259 aacaagcacatcatgatagaccttggaactggaaacaacaacaagatcaactgggctatg 318
|||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 323 aacaagcacatcatgatagatcttggcactggtaacaacaacaagatcaattgggctatg 264
Query: 319 aaggacaagcaggagttcattgacatcattgagaccatctacaggggtgcaaggaaggga 378
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 263 aaggacaagcaggagttcattgacatcattgagaccgtctacagaggggcaaggaaggga 204
Query: 379 cgtggtctcgtcattgcccccaaagattactccaccaagtacagatactaa 429
|||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 203 cgtggtctcgtcattgcccccaaagattactccaccaagtaccgttactaa 153
Score = 192 bits (97), Expect = 1e-48
Identities = 115/121 (95%)
Strand = Plus / Minus
Query: 1 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaattcttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 atgtcgtacctgttgcctcacttgcattcaggatgggctgtggatcaggcaatccttgct 385
Query: 61 gaagaggagcgtctcgttgtcatccgcttcggccacgattgggatgagacttgcatgcag 120
|| || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 384 gaggaagagcgtcttgttgtcatccgcttcggtcacgattgggatgagacctgcatgcag 325
Query: 121 a 121
|
Sbjct: 324 a 324