Miyakogusa Predicted Gene

Lj6g3v0084360.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0084360.2 Non Chatacterized Hit- tr|I1KTJ9|I1KTJ9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,42.64,2e-19,RRM,RNA
recognition motif domain; RNA recognition motif,RNA recognition motif
domain; RRM_1,RNA reco,CUFF.57495.2
         (381 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62001 similar to UniRef100_Q41124 Cluster: Chloroplas...   755   0.0  
gnl|LJGI|TC62531 similar to UniRef100_Q41124 Cluster: Chloroplas...   747   0.0  

>gnl|LJGI|TC62001 similar to UniRef100_Q41124 Cluster: Chloroplast RNA binding
           protein precursor; n=1; Phaseolus vulgaris|Rep:
           Chloroplast RNA binding protein precursor - Phaseolus
           vulgaris (Kidney bean) (French bean), partial (75%)
          Length = 1152

 Score =  755 bits (381), Expect = 0.0
 Identities = 381/381 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagttgtgttgaagattgtaatactgtcatcgaaaatcttgatggaaaagagttcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atgagttgtgttgaagattgtaatactgtcatcgaaaatcttgatggaaaagagttcttg 520

                                                                       
Query: 61  ggccgaactttgcgggtgaacttatctgacaaaccaaaaccaaaagaacccttgtacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggccgaactttgcgggtgaacttatctgacaaaccaaaaccaaaagaacccttgtacccc 580

                                                                       
Query: 121 gaaactgagcataagctttttgttgggaacctgtcatggacagtaacttctgagagtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gaaactgagcataagctttttgttgggaacctgtcatggacagtaacttctgagagtcta 640

                                                                       
Query: 181 atacaagtctttcaagaatatggaaccgtggtcggagccagggtcttatatgatggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 atacaagtctttcaagaatatggaaccgtggtcggagccagggtcttatatgatggggaa 700

                                                                       
Query: 241 accggaaggtcacgtggctatggattcgtttgctattcaaaaagatctgaattggaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 accggaaggtcacgtggctatggattcgtttgctattcaaaaagatctgaattggaaact 760

                                                                       
Query: 301 gcccttatatccctaaataatgtggaactagaaggacgagcaatacgagtaagcttggcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gcccttatatccctaaataatgtggaactagaaggacgagcaatacgagtaagcttggcg 820

                                
Query: 361 gaaggaaaacgttcataaggt 381
           |||||||||||||||||||||
Sbjct: 821 gaaggaaaacgttcataaggt 841


>gnl|LJGI|TC62531 similar to UniRef100_Q41124 Cluster: Chloroplast RNA binding
           protein precursor; n=1; Phaseolus vulgaris|Rep:
           Chloroplast RNA binding protein precursor - Phaseolus
           vulgaris (Kidney bean) (French bean), partial (60%)
          Length = 969

 Score =  747 bits (377), Expect = 0.0
 Identities = 380/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagttgtgttgaagattgtaatactgtcatcgaaaatcttgatggaaaagagttcttg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atgagttgtgtggaagattgtaatactgtcatcgaaaatcttgatggaaaagagttcttg 267

                                                                       
Query: 61  ggccgaactttgcgggtgaacttatctgacaaaccaaaaccaaaagaacccttgtacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggccgaactttgcgggtgaacttatctgacaaaccaaaaccaaaagaacccttgtacccc 327

                                                                       
Query: 121 gaaactgagcataagctttttgttgggaacctgtcatggacagtaacttctgagagtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaactgagcataagctttttgttgggaacctgtcatggacagtaacttctgagagtcta 387

                                                                       
Query: 181 atacaagtctttcaagaatatggaaccgtggtcggagccagggtcttatatgatggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atacaagtctttcaagaatatggaaccgtggtcggagccagggtcttatatgatggggaa 447

                                                                       
Query: 241 accggaaggtcacgtggctatggattcgtttgctattcaaaaagatctgaattggaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 accggaaggtcacgtggctatggattcgtttgctattcaaaaagatctgaattggaaact 507

                                                                       
Query: 301 gcccttatatccctaaataatgtggaactagaaggacgagcaatacgagtaagcttggcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcccttatatccctaaataatgtggaactagaaggacgagcaatacgagtaagcttggcg 567

                                
Query: 361 gaaggaaaacgttcataaggt 381
           |||||||||||||||||||||
Sbjct: 568 gaaggaaaacgttcataaggt 588