Miyakogusa Predicted Gene
- Lj6g3v0084360.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj6g3v0084360.1 tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147462,50,5e-16,RRM_1,RNA recognition motif domain; RNA
recognition motif,RNA recognition motif domain; no
descripti,CUFF.57495.1
(825 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62001 similar to UniRef100_Q41124 Cluster: Chloroplas... 1635 0.0
gnl|LJGI|TC62531 similar to UniRef100_Q41124 Cluster: Chloroplas... 1072 0.0
>gnl|LJGI|TC62001 similar to UniRef100_Q41124 Cluster: Chloroplast RNA binding
protein precursor; n=1; Phaseolus vulgaris|Rep:
Chloroplast RNA binding protein precursor - Phaseolus
vulgaris (Kidney bean) (French bean), partial (75%)
Length = 1152
Score = 1635 bits (825), Expect = 0.0
Identities = 825/825 (100%)
Strand = Plus / Plus
Query: 1 atggctgccactgctgcagctgcaggcatagcctcttccttgttttcttcttccatcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 atggctgccactgctgcagctgcaggcatagcctcttccttgttttcttcttccatcaac 76
Query: 61 accaatgtcaaatgtctacgctccaagaactgctccgtgttggcatcagtgtcacagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 accaatgtcaaatgtctacgctccaagaactgctccgtgttggcatcagtgtcacagtcc 136
Query: 121 tacctagtggaacctttgtccattggtggcaccatctcacacaacaagttgtgggttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tacctagtggaacctttgtccattggtggcaccatctcacacaacaagttgtgggttcct 196
Query: 181 agaatttctgctgctgttgcacaagaagaggtggcactggctgctgaggcagatgatggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agaatttctgctgctgttgcacaagaagaggtggcactggctgctgaggcagatgatggt 256
Query: 241 ttagttgaagagaaagttgaggaagtggtagcagaggaagaggctaattcttctgtcaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttagttgaagagaaagttgaggaagtggtagcagaggaagaggctaattcttctgtcaac 316
Query: 301 actaagctttattttgggaatttgccatacagtgttgatagtgcacaacttgcagggttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actaagctttattttgggaatttgccatacagtgttgatagtgcacaacttgcagggttg 376
Query: 361 attgaggaatatggtagtgctgaactaattgaggttctttacgacagggactctggaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attgaggaatatggtagtgctgaactaattgaggttctttacgacagggactctggaaaa 436
Query: 421 agtagaggctttgcatttgtgacgatgagttgtgttgaagattgtaatactgtcatcgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtagaggctttgcatttgtgacgatgagttgtgttgaagattgtaatactgtcatcgaa 496
Query: 481 aatcttgatggaaaagagttcttgggccgaactttgcgggtgaacttatctgacaaacca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aatcttgatggaaaagagttcttgggccgaactttgcgggtgaacttatctgacaaacca 556
Query: 541 aaaccaaaagaacccttgtaccccgaaactgagcataagctttttgttgggaacctgtca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaccaaaagaacccttgtaccccgaaactgagcataagctttttgttgggaacctgtca 616
Query: 601 tggacagtaacttctgagagtctaatacaagtctttcaagaatatggaaccgtggtcgga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tggacagtaacttctgagagtctaatacaagtctttcaagaatatggaaccgtggtcgga 676
Query: 661 gccagggtcttatatgatggggaaaccggaaggtcacgtggctatggattcgtttgctat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gccagggtcttatatgatggggaaaccggaaggtcacgtggctatggattcgtttgctat 736
Query: 721 tcaaaaagatctgaattggaaactgcccttatatccctaaataatgtggaactagaagga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcaaaaagatctgaattggaaactgcccttatatccctaaataatgtggaactagaagga 796
Query: 781 cgagcaatacgagtaagcttggcggaaggaaaacgttcataaggt 825
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cgagcaatacgagtaagcttggcggaaggaaaacgttcataaggt 841
>gnl|LJGI|TC62531 similar to UniRef100_Q41124 Cluster: Chloroplast RNA binding
protein precursor; n=1; Phaseolus vulgaris|Rep:
Chloroplast RNA binding protein precursor - Phaseolus
vulgaris (Kidney bean) (French bean), partial (60%)
Length = 969
Score = 1072 bits (541), Expect = 0.0
Identities = 544/545 (99%)
Strand = Plus / Plus
Query: 281 aggctaattcttctgtcaacactaagctttattttgggaatttgccatacagtgttgata 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 aggctaattcttctgtcaacactaagctttattttgggaatttgccatacagtgttgata 103
Query: 341 gtgcacaacttgcagggttgattgaggaatatggtagtgctgaactaattgaggttcttt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gtgcacaacttgcagggttgattgaggaatatggtagtgctgaactaattgaggttcttt 163
Query: 401 acgacagggactctggaaaaagtagaggctttgcatttgtgacgatgagttgtgttgaag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 164 acgacagggactctggaaaaagtagaggctttgcatttgtgacgatgagttgtgtggaag 223
Query: 461 attgtaatactgtcatcgaaaatcttgatggaaaagagttcttgggccgaactttgcggg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 attgtaatactgtcatcgaaaatcttgatggaaaagagttcttgggccgaactttgcggg 283
Query: 521 tgaacttatctgacaaaccaaaaccaaaagaacccttgtaccccgaaactgagcataagc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgaacttatctgacaaaccaaaaccaaaagaacccttgtaccccgaaactgagcataagc 343
Query: 581 tttttgttgggaacctgtcatggacagtaacttctgagagtctaatacaagtctttcaag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tttttgttgggaacctgtcatggacagtaacttctgagagtctaatacaagtctttcaag 403
Query: 641 aatatggaaccgtggtcggagccagggtcttatatgatggggaaaccggaaggtcacgtg 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatatggaaccgtggtcggagccagggtcttatatgatggggaaaccggaaggtcacgtg 463
Query: 701 gctatggattcgtttgctattcaaaaagatctgaattggaaactgcccttatatccctaa 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gctatggattcgtttgctattcaaaaagatctgaattggaaactgcccttatatccctaa 523
Query: 761 ataatgtggaactagaaggacgagcaatacgagtaagcttggcggaaggaaaacgttcat 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ataatgtggaactagaaggacgagcaatacgagtaagcttggcggaaggaaaacgttcat 583
Query: 821 aaggt 825
|||||
Sbjct: 584 aaggt 588
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 atggctgccactgctgcagctgcaggc 27
|||||||||||||||||||||||||||
Sbjct: 21 atggctgccactgctgcagctgcaggc 47