Miyakogusa Predicted Gene

Lj6g3v0057770.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0057770.1 tr|B9HKT6|B9HKT6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564980 PE=4
SV=1,66.18,6e-19,seg,NULL,CUFF.57442.1
         (324 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63157 similar to UniRef100_UPI0000498D61 Cluster: sno...   634   0.0  

>gnl|LJGI|TC63157 similar to UniRef100_UPI0000498D61 Cluster: snoRNA binding protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: snoRNA binding
           protein - Entamoeba histolytica HM-1:IMSS, partial (5%)
          Length = 1068

 Score =  634 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggttgttgatggatacggattccaaggatgctaacaattacatggataataaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atgtggttgttgatggatacggattccaaggatgctaacaattacatggataataaacct 424

                                                                       
Query: 61  gtgatgggttcttctttgggaggtgaaaaggttgatgatcatgatcatgatcatgtcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgatgggttcttctttgggaggtgaaaaggttgatgatcatgatcatgatcatgtcaat 484

                                                                       
Query: 121 ggagaagatgatagtgactctaattctttgttgcctccccggagaggtggcatgtcacgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggagaagatgatagtgactctaattctttgttgcctccccggagaggtggcatgtcacgg 544

                                                                       
Query: 181 aactctgataagacacgcctgaaagtgcagtggaatgataggaatggaaacaagcttgtt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 545 aactctgataagacacgcctgaaagtgcggtggaatgataggaatggaaacaagcttgtt 604

                                                                       
Query: 241 gaggtgcttgaatatgagccaagtgatgtcagtgactcagacgacgatgaagattcagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaggtgcttgaatatgagccaagtgatgtcagtgactcagacgacgatgaagattcagat 664

                                   
Query: 301 tcttgtatctgtacaataatgtag 324
           ||||||||||||||||||||||||
Sbjct: 665 tcttgtatctgtacaataatgtag 688