Miyakogusa Predicted Gene

Lj6g3v0028840.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v0028840.1 tr|G7I4N4|G7I4N4_MEDTR Serine/threonine protein
kinase Nek9 OS=Medicago truncatula GN=MTR_1g042800
P,72.07,0,RCCNDNSATION,Regulator of chromosome condensation, RCC1;
HYPOTHETICAL PROTEIN,NULL; REGULATOR OF CHR,CUFF.57393.1
         (3243 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72865 homologue to UniRef100_A7QMY3 Cluster: Chromoso...    68   4e-10
gnl|LJGI|FS324848 similar to UniRef100_A7QMY3 Cluster: Chromosom...    56   1e-06
gnl|LJGI|BP053036 homologue to UniRef100_A7QMY2 Cluster: Chromos...    54   6e-06

>gnl|LJGI|TC72865 homologue to UniRef100_A7QMY3 Cluster: Chromosome undetermined
           scaffold_129, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_129,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (86%)
          Length = 1058

 Score = 67.9 bits (34), Expect = 4e-10
 Identities = 91/110 (82%)
 Strand = Plus / Plus

                                                                       
Query: 193 ggacagagaacagctgtctttaaaagatatttgcgccctgaaaaggattatctgtcattt 252
           ||||| ||||| ||||| ||  || ||||| |||| ||||| ||||| ||| |||| |||
Sbjct: 654 ggacaaagaactgctgttttccaacgatatctgcgtcctgagaaggactatttgtccttt 713

                                                             
Query: 253 tcacttatttataagaacggggaacgatcacttgatctgatctgcaagga 302
           ||||||||||||||  ||||| | ||||| |||||| |||| ||||||||
Sbjct: 714 tcacttatttataaccacgggaagcgatcccttgatttgatttgcaagga 763


>gnl|LJGI|FS324848 similar to UniRef100_A7QMY3 Cluster: Chromosome undetermined
           scaffold_129, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_129,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (96%)
          Length = 737

 Score = 56.0 bits (28), Expect = 1e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 193 ggacagagaacagctgtctttaaaagatatttgcgccctgaaaaggattatctgtcattt 252
           ||||| ||||| ||||| || ||| | || ||||| ||||||||||| ||| |||| |||
Sbjct: 344 ggacaaagaactgctgttttcaaacgttacttgcgtcctgaaaaggagtatttgtccttt 403

                       
Query: 253 tcacttatttat 264
           ||||||||||||
Sbjct: 404 tcacttatttat 415


>gnl|LJGI|BP053036 homologue to UniRef100_A7QMY2 Cluster: Chromosome undetermined
            scaffold_129, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_129, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (15%)
          Length = 456

 Score = 54.0 bits (27), Expect = 6e-06
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1000 tggggtgatggcacacataatgctggacttctcggccatggcaccgatgctagccactgg 1059
            ||||||||||| || ||||| ||||||||||| || ||||| || |||| ||| || |||
Sbjct: 80   tggggtgatggtactcataaagctggacttcttggtcatggaactgatgttagtcattgg 139

                       
Query: 1060 ataccgaagag 1070
            ||||| |||||
Sbjct: 140  ataccaaagag 150