Miyakogusa Predicted Gene
- Lj5g3v2300300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2300300.1 Non Chatacterized Hit- tr|H9MCK1|H9MCK1_PINLA
Uncharacterized protein (Fragment) OS=Pinus
lambertian,71.21,2e-17,zinc finger,Zinc finger, CCCH-type; K homology
RNA-binding domain,K Homology domain; Eukaryotic type,CUFF.57316.1
(903 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73814 similar to UniRef100_A7P000 Cluster: Chromosome... 1782 0.0
gnl|LJGI|GO035488 119 3e-26
gnl|LJGI|TC81076 similar to UniRef100_A7PVV6 Cluster: Chromosome... 94 2e-18
gnl|LJGI|TC67654 similar to UniRef100_A7PVV6 Cluster: Chromosome... 94 2e-18
>gnl|LJGI|TC73814 similar to UniRef100_A7P000 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (88%)
Length = 1279
Score = 1782 bits (899), Expect = 0.0
Identities = 902/903 (99%)
Strand = Plus / Plus
Query: 1 atggatcgaaagaggggaagacctgaaggtgccttcaatggcaatggcggcgccaagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 atggatcgaaagaggggaagacctgaaggtgccttcaatggcaatggcggcgccaagaaa 232
Query: 61 tccaagccagaaatggagtccttcacaactggtttaggaagcaaatccaagccatgcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tccaagccagaaatggagtccttcacaactggtttaggaagcaaatccaagccatgcaca 292
Query: 121 aagtttttcagcacctctgggtgtccatttggtgacggatgccatttcctgcattatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aagtttttcagcacctctgggtgtccatttggtgacggatgccatttcctgcattatgtt 352
Query: 181 cctggtggcttcaaagctatctctcagatgatcaatgttggaagcagtcctactattcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cctggtggcttcaaagctatctctcagatgatcaatgttggaagcagtcctactattcca 412
Query: 241 caaatggggagaaatccagttcctccaccatccttcccagatggatcttctcctccagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 caaatggggagaaatccagttcctccaccatccttcccagatggatcttctcctccagtt 472
Query: 301 gttaaaacccgcatgtgcaacaagtataattcatctgaaggttgcaaatttggtgataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gttaaaacccgcatgtgcaacaagtataattcatctgaaggttgcaaatttggtgataga 532
Query: 361 tgccactttgcccatggggagtgggaacttggcaggcccacactcccgccatatgaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgccactttgcccatggggagtgggaacttggcaggcccacactcccgccatatgaagat 592
Query: 421 cctcgtggtttcggtcaaatgcaaagtaataggggtggtgggcgaattgagcccccacct 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 593 cctcgtggtttcggtcaaatgcaaagtaatagggggggtgggcgaattgagcccccacct 652
Query: 481 ccaggtcgtggagctgctgctgctggctttggagcctcggctactgccaagattagtatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ccaggtcgtggagctgctgctgctggctttggagcctcggctactgccaagattagtatc 712
Query: 541 aatgcttccctagctggagctatcattggaaaaaatggtgtcaactccaagcaaatctgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aatgcttccctagctggagctatcattggaaaaaatggtgtcaactccaagcaaatctgt 772
Query: 601 cgtgtaacaggagctaaactttccataagggaacatgactctgatcccaaccttaaaaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 cgtgtaacaggagctaaactttccataagggaacatgactctgatcccaaccttaaaaat 832
Query: 661 atcgagcttgaaggcagttttgatcagatcaaccaagccagtgcaatggttcatgaactt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 atcgagcttgaaggcagttttgatcagatcaaccaagccagtgcaatggttcatgaactt 892
Query: 721 attctaagtgtaagttctgtctctgggcctccagcgaaaaactttagctcacagcattct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 attctaagtgtaagttctgtctctgggcctccagcgaaaaactttagctcacagcattct 952
Query: 781 gcccctgggagcaacttgaagactaagctgtgtgaaaactttgccaaaggctcgtgcact 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gcccctgggagcaacttgaagactaagctgtgtgaaaactttgccaaaggctcgtgcact 1012
Query: 841 tttggggaaaggtgccactttgctcatggaacagatgaattacgcaggcctggaatgtga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 tttggggaaaggtgccactttgctcatggaacagatgaattacgcaggcctggaatgtga 1072
Query: 901 tag 903
|||
Sbjct: 1073 tag 1075
>gnl|LJGI|GO035488
Length = 163
Score = 119 bits (60), Expect = 3e-26
Identities = 149/163 (91%), Gaps = 13/163 (7%)
Strand = Plus / Plus
Query: 288 ttctcctccagtt-gttaaaaccc-gcatgt-gcaacaagtataatt-catctgaaggtt 343
||||||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||||
Sbjct: 1 ttctcctccagtttgttaaaaccccgcatgttgcaacaagtataatttcatctgaaggtt 60
Query: 344 -gcaaattt-ggtgatagatgccacttt-gcccatgggg-agtggg--aactt-ggcagg 396
|||||||| |||||||||||||||||| |||||||||| ||| || ||||| ||||||
Sbjct: 61 tgcaaattttggtgatagatgccacttttgcccatgggggagttgggaaactttggcagg 120
Query: 397 cccacact-cccgccatatgaaga-tcctcgtggtttcggtca 437
|||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 121 cccacactccccgccatatgaagattcctcgtggtttcggtca 163
>gnl|LJGI|TC81076 similar to UniRef100_A7PVV6 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 475
Score = 93.7 bits (47), Expect = 2e-18
Identities = 113/135 (83%)
Strand = Plus / Plus
Query: 54 caagaaatccaagccagaaatggagtccttcacaactggtttaggaagcaaatccaagcc 113
||||||||| |||| |||| ||||||| || || ||||| ||||||||||||| |||||
Sbjct: 274 caagaaatctaagcaagaattggagtcattatcatctggtgtaggaagcaaatcgaagcc 333
Query: 114 atgcacaaagtttttcagcacctctgggtgtccatttggtgacggatgccatttcctgca 173
||| || |||||||||||||| |||| || ||||||||||| | ||||| ||| ||||
Sbjct: 334 atgtaccaagtttttcagcactgctggctgcccatttggtgagagctgccacttcttgca 393
Query: 174 ttatgttcctggtgg 188
|||||||| |||||
Sbjct: 394 ctatgttccgggtgg 408
>gnl|LJGI|TC67654 similar to UniRef100_A7PVV6 Cluster: Chromosome chr8 scaffold_34,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_34, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (81%)
Length = 1281
Score = 93.7 bits (47), Expect = 2e-18
Identities = 113/135 (83%)
Strand = Plus / Plus
Query: 54 caagaaatccaagccagaaatggagtccttcacaactggtttaggaagcaaatccaagcc 113
||||||||| |||| |||| ||||||| || || ||||| ||||||||||||| |||||
Sbjct: 240 caagaaatctaagcaagaattggagtcattatcatctggtgtaggaagcaaatcgaagcc 299
Query: 114 atgcacaaagtttttcagcacctctgggtgtccatttggtgacggatgccatttcctgca 173
||| || |||||||||||||| |||| || ||||||||||| | ||||| ||| ||||
Sbjct: 300 atgtaccaagtttttcagcactgctggctgcccatttggtgagagctgccacttcttgca 359
Query: 174 ttatgttcctggtgg 188
|||||||| |||||
Sbjct: 360 ctatgttccgggtgg 374
Score = 69.9 bits (35), Expect = 3e-11
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 304 aaaacccgcatgtgcaacaagtataattcatctgaaggttgcaaatttggtgatagatgc 363
||||| ||||| |||||||||| ||| | ||||||| |||||||||||||| | ||||
Sbjct: 484 aaaactcgcatatgcaacaagtttaacactgctgaaggctgcaaatttggtgacaaatgc 543
Query: 364 cactttgcccatggggagtgggaacttggca 394
|| ||||||||||| || |||||||| ||||
Sbjct: 544 cattttgcccatggtgaatgggaactcggca 574