Miyakogusa Predicted Gene

Lj5g3v2292540.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2292540.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,62.32,6e-17,HIGHMOBLTY12,NULL; HMG-box,High mobility group,
superfamily; HMG_box,High mobility group, superfamil,CUFF.57220.1
         (324 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66492 weakly similar to UniRef100_A9RCM0 Cluster: Pre...   642   0.0  

>gnl|LJGI|TC66492 weakly similar to UniRef100_A9RCM0 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (37%)
          Length = 884

 Score =  642 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtaggacaattggtgacctctggaacaagttacaagaatcagaaaagacagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atgagtaggacaattggtgacctctggaacaagttacaagaatcagaaaagacagtttat 430

                                                                       
Query: 61  caagagaaggctatgaaggataaagagaggtaccatgctgaaatggaggattatcatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caagagaaggctatgaaggataaagagaggtaccatgctgaaatggaggattatcatgag 490

                                                                       
Query: 121 aaactgaagatggacctagttatcagtgacgccgtgccacttcgacaacgatttcctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaactgaagatggacctagttatcagtgacgccgtgccacttcgacaacgatttcctgaa 550

                                                                       
Query: 181 ccggatacagacatgttggatgctgacgcgaaattggatgatgctcaggcagattctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccggatacagacatgttggatgctgacgcgaaattggatgatgctcaggcagattctctt 610

                                                                       
Query: 241 caaactgtggaggagagcagttttggtgaaagtgactatgaagttgataaagctggggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caaactgtggaggagagcagttttggtgaaagtgactatgaagttgataaagctggggag 670

                                   
Query: 301 agagatttcaatgtggattcatga 324
           ||||||||||||||||||||||||
Sbjct: 671 agagatttcaatgtggattcatga 694