Miyakogusa Predicted Gene

Lj5g3v2265250.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2265250.1 tr|A0DLH3|A0DLH3_PARTE Chromosome undetermined
scaffold_55, whole genome shotgun sequence
OS=Paramec,31.58,5e-18,RNA-binding domain, RBD,NULL; Retrovirus zinc
finger-like domains,Zinc finger, CCHC-type; no descrip,CUFF.57150.1
         (1722 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75695 homologue to UniRef100_Q9SCY3 Cluster: Probable...   983   0.0  

>gnl|LJGI|TC75695 homologue to UniRef100_Q9SCY3 Cluster: Probable FKBP-type
           peptidyl-prolyl cis-trans isomerase 4, chloroplast
           precursor; n=1; Arabidopsis thaliana|Rep: Probable
           FKBP-type peptidyl-prolyl cis-trans isomerase 4,
           chloroplast precursor - Arabidopsis thaliana (Mouse-ear
           cress), partial (7%)
          Length = 773

 Score =  983 bits (496), Expect = 0.0
 Identities = 499/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggttctatcgaacaagaagctgaagcagaagcttagagctgaatcagctcaaaaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  atggttctatcgaacaagaagctgaagcagaagcttagagctgaatcagctcaaaaccta 146

                                                                       
Query: 61  atcaactccaacgctgttgttgttgctgctcctgatacctctttcaaacagcttttggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 atcaactccaacgctgttgttgttgctgctcctgatacctctttcaaacagcttttggat 206

                                                                       
Query: 121 actgctagccacacacccagattgtccaagagagatgttctcagaaagcttcgatcgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 actgctagccacacacccagattgtccaagagagatgttctcagaaagcttcgatcgttg 266

                                                                       
Query: 181 caacccccttcaaaagctgctgctcccaaagataaaggaacgaacaaggaaaatggggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caacccccttcaaaagctgctgctcccaaagataaaggaacgaacaaggaaaatggggtt 326

                                                                       
Query: 241 gaggattcaggcaatcagaagaagaacaacaacaacaagaagagaaaaggggaggtgaag 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 gaggattcaggcaatcagaagaagaagaacaacaacaagaagagaaaaggggaggtgaag 386

                                                                       
Query: 301 gatgatgatgatgtgactaatggggtgatcagcgatgccagtgaatcaaagaagcagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gatgatgatgatgtgactaatggggtgatcagcgatgccagtgaatcaaagaagcagaag 446

                                                                       
Query: 361 cagaataaggcgaaatctaagaagcagaataaggcgaaatcgaaggagcagaagcagaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagaataaggcgaaatctaagaagcagaataaggcgaaatcgaaggagcagaagcagaat 506

                                                                       
Query: 421 aaggtgacagaaaacggttcaaataatgaaccggaaatgtcagaggctacagagttaacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaggtgacagaaaacggttcaaataatgaaccggaaatgtcagaggctacagagttaacc 566

                               
Query: 481 aagaccaatccctctatcag 500
           ||||||||||||||||||||
Sbjct: 567 aagaccaatccctctatcag 586