Miyakogusa Predicted Gene
- Lj5g3v2263950.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2263950.1 tr|A9T9J7|A9T9J7_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,46.9,3e-17,G-patch,G-patch domain; coiled-coil,NULL; glycine
rich nucleic binding domain,G-patch domain; seg,NU,CUFF.57122.1
(393 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72010 weakly similar to UniRef100_A7PNT3 Cluster: Chr... 157 6e-38
gnl|LJGI|TC69064 similar to UniRef100_A9T9J7 Cluster: Predicted ... 133 9e-31
gnl|LJGI|TC57123 homologue to UniRef100_A9Q1K1 Cluster: SYM8; n=... 62 3e-09
gnl|LJGI|FS340019 similar to UniRef100_A7QI31 Cluster: Chromosom... 60 1e-08
gnl|LJGI|BW594669 similar to UniRef100_A7P5R3 Cluster: Chromosom... 60 1e-08
gnl|LJGI|TC68569 similar to UniRef100_A9SIP0 Cluster: Predicted ... 58 4e-08
gnl|LJGI|BP050449 homologue to UniRef100_Q533R9 Cluster: MADS bo... 52 3e-06
gnl|LJGI|TC65119 homologue to UniRef100_Q533R9 Cluster: MADS box... 52 3e-06
>gnl|LJGI|TC72010 weakly similar to UniRef100_A7PNT3 Cluster: Chromosome chr8
scaffold_23, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr8 scaffold_23, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 1231
Score = 157 bits (79), Expect = 6e-38
Identities = 115/127 (90%)
Strand = Plus / Plus
Query: 129 gcagggtagactagaacccgtggaaactcgtgtgaagaataacaagcgaggtttgggggc 188
||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 1 gcagggtagactagaacccatggaaacttgtgtgaagaataacaaacgaggtttgggagc 60
Query: 189 ggacaaagtgaagaaaatggccgtgaagtctgatgatagtgatgcctctaaagggaacaa 248
|||||||| |||||||| ||| |||||||||||||||||| ||| |||| |||||||| |
Sbjct: 61 ggacaaagggaagaaaaaggctgtgaagtctgatgatagtaatgtctctgaagggaacta 120
Query: 249 gcagcag 255
||||||
Sbjct: 121 tcagcag 127
>gnl|LJGI|TC69064 similar to UniRef100_A9T9J7 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(23%)
Length = 804
Score = 133 bits (67), Expect = 9e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 77 agctattgaagaagcaaggttggaaagaagggactggtcttgggatatctgagcagggta 136
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 718 agctattaaagaagcaaggttggaaagaagggaatggtcttgggatatttgagcagggta 777
Query: 137 gactagaacccgtggaaactcgtgtga 163
||||||||||| |||||||| ||||||
Sbjct: 778 gactagaacccatggaaacttgtgtga 804
>gnl|LJGI|TC57123 homologue to UniRef100_A9Q1K1 Cluster: SYM8; n=1; Pisum
sativum|Rep: SYM8 - Pisum sativum (Garden pea), partial
(83%)
Length = 3269
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 23 cagcaacagcaacagcaacagcaacagcaat 53
|||||||||||||||||||||||||||||||
Sbjct: 110 cagcaacagcaacagcaacagcaacagcaat 140
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 27 aacagcaacagcaacagcaacagcaa 52
||||||||||||||||||||||||||
Sbjct: 108 aacagcaacagcaacagcaacagcaa 133
>gnl|LJGI|FS340019 similar to UniRef100_A7QI31 Cluster: Chromosome chr17 scaffold_101,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_101, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 694
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 cagcaacagcaacagcaacagcaacagcaa 52
||||||||||||||||||||||||||||||
Sbjct: 348 cagcaacagcaacagcaacagcaacagcaa 377
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 23 cagcaacagcaacagcaacagcaacagca 51
|||||||||||||||||||||||||||||
Sbjct: 354 cagcaacagcaacagcaacagcaacagca 382
>gnl|LJGI|BW594669 similar to UniRef100_A7P5R3 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 485
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 cagcaacagcaacagcaacagcaacagcaa 52
||||||||||||||||||||||||||||||
Sbjct: 10 cagcaacagcaacagcaacagcaacagcaa 39
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 23 cagcaacagcaacagcaacagcaaca 48
||||||||||||||||||||||||||
Sbjct: 16 cagcaacagcaacagcaacagcaaca 41
>gnl|LJGI|TC68569 similar to UniRef100_A9SIP0 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(32%)
Length = 608
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 23 cagcaacagcaacagcaacagcaacagca 51
|||||||||||||||||||||||||||||
Sbjct: 361 cagcaacagcaacagcaacagcaacagca 389
>gnl|LJGI|BP050449 homologue to UniRef100_Q533R9 Cluster: MADS box protein AGL1; n=1;
Lotus japonicus|Rep: MADS box protein AGL1 - Lotus
japonicus, partial (44%)
Length = 493
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 22 tcagcaacagcaacagcaacagcaacagca 51
|||||||||||||||||||||||| |||||
Sbjct: 346 tcagcaacagcaacagcaacagcagcagca 317
>gnl|LJGI|TC65119 homologue to UniRef100_Q533R9 Cluster: MADS box protein AGL1; n=1;
Lotus japonicus|Rep: MADS box protein AGL1 - Lotus
japonicus, complete
Length = 1053
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 22 tcagcaacagcaacagcaacagcaacagca 51
|||||||||||||||||||||||| |||||
Sbjct: 623 tcagcaacagcaacagcaacagcagcagca 652