Miyakogusa Predicted Gene
- Lj5g3v2258560.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2258560.1 Non Chatacterized Hit- tr|A5BC54|A5BC54_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,35.56,0.00004,SUBFAMILY NOT NAMED,NULL; RING ZINC FINGER
PROTEIN,NULL; RING/U-box,NULL; seg,NULL; zf-RING_2,Zinc f,CUFF.57101.1
(985 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72773 similar to UniRef100_A7QEK6 Cluster: Chromosome... 959 0.0
gnl|LJGI|BW620615 367 e-101
gnl|LJGI|TC74677 weakly similar to UniRef100_A8HXQ8 Cluster: Sel... 268 6e-71
gnl|LJGI|TC81769 similar to UniRef100_A7PGH2 Cluster: Chromosome... 56 4e-07
>gnl|LJGI|TC72773 similar to UniRef100_A7QEK6 Cluster: Chromosome chr17 scaffold_85,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_85, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 800
Score = 959 bits (484), Expect = 0.0
Identities = 484/484 (100%)
Strand = Plus / Plus
Query: 244 gccgtcgacttccagaaccctcactccggtacccgacccgaatcggacatgttcgacccg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gccgtcgacttccagaaccctcactccggtacccgacccgaatcggacatgttcgacccg 376
Query: 304 attctctttctccagaaccacctccaaggccttcgcgctgacggagccaacgttcagttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attctctttctccagaaccacctccaaggccttcgcgctgacggagccaacgttcagttc 436
Query: 364 gaggttgaccaccctggcgaacccgggcttcgcctccctgccaacctcggcgattacttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaggttgaccaccctggcgaacccgggcttcgcctccctgccaacctcggcgattacttt 496
Query: 424 cttggccccgggttggagcagttgatccagcagctcgccgagaatgatccgaaccgttac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cttggccccgggttggagcagttgatccagcagctcgccgagaatgatccgaaccgttac 556
Query: 484 gggacgccgccggcgtcgaaggacgccattgagaagctgccgactgtgaccgtggatgat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gggacgccgccggcgtcgaaggacgccattgagaagctgccgactgtgaccgtggatgat 616
Query: 544 gagctgctgagctcggagctgaaccagtgtgcggtttgtcaggacgagtttgagaagggt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagctgctgagctcggagctgaaccagtgtgcggtttgtcaggacgagtttgagaagggt 676
Query: 604 acgcaggtgaagcagatgccttgcaagcatgtgtaccatgatgagtgcttgctcccctgg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 acgcaggtgaagcagatgccttgcaagcatgtgtaccatgatgagtgcttgctcccctgg 736
Query: 664 cttcagttgcacaattcttgccctgtgtgtcggtatgagttgcccactgacgatgctgat 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttcagttgcacaattcttgccctgtgtgtcggtatgagttgcccactgacgatgctgat 796
Query: 724 tatg 727
||||
Sbjct: 797 tatg 800
Score = 343 bits (173), Expect = 1e-93
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 atgtcttccggcagcggcggaattaagccgttcttctgccacgtgtgcagtcggagattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 atgtcttccggcagcggcggaattaagccgttcttctgccacgtgtgcagtcggagattc 133
Query: 61 acctgctccgacgatgactccgagcctttctgcccgatctgcctcgaaggttttgtcgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 acctgctccgacgatgactccgagcctttctgcccgatctgcctcgaaggttttgtcgaa 193
Query: 121 gaattgccgccaaataatcccaaccctaaccctaacgtcgcattgcatttcgg 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattgccgccaaataatcccaaccctaaccctaacgtcgcattgcatttcgg 246
>gnl|LJGI|BW620615
Length = 519
Score = 367 bits (185), Expect = e-101
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 244 gccgtcgacttccagaaccctcactccggtacccgacccgaatcggacatgttcgacccg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gccgtcgacttccagaaccctcactccggtacccgacccgaatcggacatgttcgacccg 394
Query: 304 attctctttctccagaaccacctccaaggccttcgcgctgacggagccaacgttcagttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 attctctttctccagaaccacctccaaggccttcgcgctgacggagccaacgttcagttc 454
Query: 364 gaggttgaccaccctggcgaacccgggcttcgcctccctgccaacctcggcgattacttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaggttgaccaccctggcgaacccgggcttcgcctccctgccaacctcggcgattacttt 514
Query: 424 cttgg 428
|||||
Sbjct: 515 cttgg 519
Score = 343 bits (173), Expect = 1e-93
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 atgtcttccggcagcggcggaattaagccgttcttctgccacgtgtgcagtcggagattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atgtcttccggcagcggcggaattaagccgttcttctgccacgtgtgcagtcggagattc 151
Query: 61 acctgctccgacgatgactccgagcctttctgcccgatctgcctcgaaggttttgtcgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 acctgctccgacgatgactccgagcctttctgcccgatctgcctcgaaggttttgtcgaa 211
Query: 121 gaattgccgccaaataatcccaaccctaaccctaacgtcgcattgcatttcgg 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattgccgccaaataatcccaaccctaaccctaacgtcgcattgcatttcgg 264
>gnl|LJGI|TC74677 weakly similar to UniRef100_A8HXQ8 Cluster: Selenocysteine-specific
elongation factor EF-Sec; n=1; Chlamydomonas
reinhardtii|Rep: Selenocysteine-specific elongation
factor EF-Sec - Chlamydomonas reinhardtii, partial (4%)
Length = 488
Score = 268 bits (135), Expect = 6e-71
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 808 ggggaaatagacctgttcacaggactttcagaatatctttgcggtatccttttggtggag 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggggaaatagacctgttcacaggactttcagaatatctttgcggtatccttttggtggag 67
Query: 868 gtggaggtgactctgctcaggacagtggtgaaagaggatggggaaataggcaggagggtt 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gtggaggtgactctgctcaggacagtggtgaaagaggatggggaaataggcaggagggtt 127
Query: 928 tggattgaaattgta 942
|||||||||||||||
Sbjct: 128 tggattgaaattgta 142
>gnl|LJGI|TC81769 similar to UniRef100_A7PGH2 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 512
Score = 56.0 bits (28), Expect = 4e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 682 tgccctgtgtgtcggtatgagttgcccactgacgatgctgattatgag 729
|||||||| ||||| |||||||| || ||||| |||||||||||||||
Sbjct: 81 tgccctgtttgtcgctatgagtttcctactgatgatgctgattatgag 128