Miyakogusa Predicted Gene

Lj5g3v2258230.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2258230.1 Non Chatacterized Hit- tr|A5C8I0|A5C8I0_VITVI
Putative uncharacterized protein (Fragment) OS=Vitis
v,33.81,5e-19,UBN2,NULL; seg,NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,gene.g63373.t1.1
         (643 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73421 weakly similar to UniRef100_Q9M197 Cluster: Cop...  1215   0.0  

>gnl|LJGI|TC73421 weakly similar to UniRef100_Q9M197 Cluster: Copia-type reverse
           transcriptase-like protein; n=1; Arabidopsis
           thaliana|Rep: Copia-type reverse transcriptase-like
           protein - Arabidopsis thaliana (Mouse-ear cress),
           partial (3%)
          Length = 888

 Score = 1215 bits (613), Expect = 0.0
 Identities = 613/613 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcagcaagtacgagcacaggaacaaatcaagttcagcagcaggtacaaacaatagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atggcagcaagtacgagcacaggaacaaatcaagttcagcagcaggtacaaacaatagtt 335

                                                                       
Query: 61  ttcaagttcgatggtaaatcaaatttcaccatgtggaaacgtttgatggagctgtgttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttcaagttcgatggtaaatcaaatttcaccatgtggaaacgtttgatggagctgtgttta 395

                                                                       
Query: 121 acaaccagtggatatagagatattatgaagaaaggttttgtcgaaccaactgaagaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acaaccagtggatatagagatattatgaagaaaggttttgtcgaaccaactgaagaagat 455

                                                                       
Query: 181 aaaggaaaagctgatgagcaacaagttgagaaagatcgtatgctcaaccaaaaagctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaaggaaaagctgatgagcaacaagttgagaaagatcgtatgctcaaccaaaaagctttg 515

                                                                       
Query: 241 ctattgatctgtcaatcaatggagctatctgtttttgagaaaattttccatgccaaatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctattgatctgtcaatcaatggagctatctgtttttgagaaaattttccatgccaaatcc 575

                                                                       
Query: 301 gcaaaagaggcttgggaaatcttgatcaatacatatgaaggtgctgaccctgtcaaacga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcaaaagaggcttgggaaatcttgatcaatacatatgaaggtgctgaccctgtcaaacga 635

                                                                       
Query: 361 acgaggttgcaaggtttaaaacgccagttcgagctgatggagcaaggaagagatgaaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acgaggttgcaaggtttaaaacgccagttcgagctgatggagcaaggaagagatgaaagc 695

                                                                       
Query: 421 attcgtgattatttttcacgaatggacaagctcgtcaacgaaatgaaatccaacggcgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 attcgtgattatttttcacgaatggacaagctcgtcaacgaaatgaaatccaacggcgat 755

                                                                       
Query: 481 gacataaaggagaaagatgttgtggacaaaatcatgcgcacgctctcaactcgttttgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gacataaaggagaaagatgttgtggacaaaatcatgcgcacgctctcaactcgttttgat 815

                                                                       
Query: 541 tatgtggtggcagccattgaagaagcaaaggatctcacaaaaatgactctaaatgatctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tatgtggtggcagccattgaagaagcaaaggatctcacaaaaatgactctaaatgatctg 875

                        
Query: 601 caagcatctttgg 613
           |||||||||||||
Sbjct: 876 caagcatctttgg 888