Miyakogusa Predicted Gene

Lj5g3v2224380.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2224380.1 Non Chatacterized Hit- tr|I1N866|I1N866_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.67,0,SUBFAMILY NOT
NAMED,NULL; CCR4 NOT-RELATED,NULL;
NOT2_3_5,NOT2/NOT3/NOT5,CUFF.56965.1
         (453 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59154 similar to UniRef100_A2Q5Q7 Cluster: Not CCR4-N...   874   0.0  

>gnl|LJGI|TC59154 similar to UniRef100_A2Q5Q7 Cluster: Not CCR4-Not complex
           component, N-terminal; tRNA-binding arm; n=1; Medicago
           truncatula|Rep: Not CCR4-Not complex component,
           N-terminal; tRNA-binding arm - Medicago truncatula
           (Barrel medic), partial (26%)
          Length = 886

 Score =  874 bits (441), Expect = 0.0
 Identities = 450/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctcgaggcagcacatcacaaaattcctctagctaaagactcagaacgtcctaggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgctcgaggcagcacatcacaaaattcctctagctaaagactcagaacgtcctaggact 304

                                                                       
Query: 61  tatactcctaggcacccaacaattacaccttctagctatcctcaaatacaggcacctata 120
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 305 tatactcctaggcacccaacaattacacctcctacctatcctcaaatacaggcacctata 364

                                                                       
Query: 121 gttaataatcctgccttttgggagaaagtgggacaggaaccattcggcactgacaccttg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 365 gttaataatcctgccttttgggagaaagtgggacaggaaccattcggcaccgacaccttg 424

                                                                       
Query: 181 ttcttcgcattttattatcaacagaacacataccaacaatatttggctgcaagggagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttcttcgcattttattatcaacagaacacataccaacaatatttggctgcaagggagcta 484

                                                                       
Query: 241 aagaagcagtcttggagataccaccgaaagtatcatacatggtttcagcgacatgaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aagaagcagtcttggagataccaccgaaagtatcatacatggtttcagcgacatgaagaa 544

                                                                       
Query: 301 cccaaagttgctaccgatgaatttgaggagggaacatatgtgtactttgattttcatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cccaaagttgctaccgatgaatttgaggagggaacatatgtgtactttgattttcatatt 604

                                                                       
Query: 361 gcaaatgatgacctgcaacatggatggtgtcaaagaatcaagactggattcacttttgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcaaatgatgacctgcaacatggatggtgtcaaagaatcaagactggattcacttttgag 664

                                            
Query: 421 tataattatcttgaagatgagcttgttgtatag 453
           |||||||||||||||||||||||||||||||||
Sbjct: 665 tataattatcttgaagatgagcttgttgtatag 697