Miyakogusa Predicted Gene

Lj5g3v2220290.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2220290.2 tr|A9S5X8|A9S5X8_PHYPA RNA polymerase II
transcription elongation factor SPT5 OS=Physcomitrella
pate,30.8,4e-17,KOW (Kyprides, Ouzounis, Woese) motif.,KOW;
Translation proteins SH3-like domain,Translation protein,CUFF.56974.2
         (2370 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW614906 weakly similar to UniRef100_Q3E9M3 Cluster: Un...   761   0.0  

>gnl|LJGI|BW614906 weakly similar to UniRef100_Q3E9M3 Cluster: Uncharacterized protein
           At5g04290.1; n=1; Arabidopsis thaliana|Rep:
           Uncharacterized, partial (2%)
          Length = 486

 Score =  761 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacgaacaagggcaagcaggtcgccggaaaagactccgctggcaagcgcaaggccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  atgacgaacaagggcaagcaggtcgccggaaaagactccgctggcaagcgcaaggccaat 158

                                                                       
Query: 61  ttcgacgatgataagaccggcggcggtggaaaacggaagaatcgtggagtggttcagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttcgacgatgataagaccggcggcggtggaaaacggaagaatcgtggagtggttcagttc 218

                                                                       
Query: 121 ttcgaagaggcagctgccgttgacgactacgacaccgataacgacaccgacgacagcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttcgaagaggcagctgccgttgacgactacgacaccgataacgacaccgacgacagcaat 278

                                                                       
Query: 181 ttcgatgatttgtttggtgatgagtatgaaacgttgtcgacgatgttgaacgatactaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttcgatgatttgtttggtgatgagtatgaaacgttgtcgacgatgttgaacgatactaat 338

                                                                       
Query: 241 gctagtgctaagagccagagtaggcccgcatttgtccccaaagaggaggtggtggatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctagtgctaagagccagagtaggcccgcatttgtccccaaagaggaggtggtggatgaa 398

                                                                       
Query: 301 gaatttgatagatttttagaggaacgctatgcaggaggctctaaatttagccacttcgcg 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaatttgatagatttttggaggaacgctatgcaggaggctctaaatttagccacttcgcg 458

                                       
Query: 361 gatgagtacgatgacaaaccaatggacc 388
           ||||||||||||||||||||||||||||
Sbjct: 459 gatgagtacgatgacaaaccaatggacc 486