Miyakogusa Predicted Gene

Lj5g3v2219240.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2219240.1 tr|B6TA69|B6TA69_MAIZE Glycine-rich RNA-binding
protein 7 OS=Zea mays PE=2 SV=1,41.03,2e-18,RNA-binding domain,
RBD,NULL; RRM,RNA recognition motif domain; ZF_CCHC,Zinc finger,
CCHC-type; PRED,CUFF.56943.1
         (858 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73764 similar to UniRef100_A7PHY0 Cluster: Chromosome...   991   0.0  
gnl|LJGI|DC596949 similar to UniRef100_A7PHY0 Cluster: Chromosom...   539   e-153

>gnl|LJGI|TC73764 similar to UniRef100_A7PHY0 Cluster: Chromosome chr13 scaffold_17,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_17, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (48%)
          Length = 634

 Score =  991 bits (500), Expect = 0.0
 Identities = 503/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcttcgaaggaagagaatcgaatattcgttggagggttgtcttgggacgtgacggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 atggcttcgaaggaagagaatcgaatattcgttggagggttgtcttgggacgtgacggag 190

                                                                       
Query: 61  cgtcagctcgaacatgcctttgatcgttacggcaaaattcttgaatgccagatcatgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cgtcagctcgaacatgcctttgatcgttacggcaaaattcttgaatgccagatcatgatg 250

                                                                       
Query: 121 gaaagagatacaggtcgtccccgaggatttgggtttatcacatttgcagaccgtagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gaaagagatacaggtcgtccccgaggatttgggtttatcacatttgcagaccgtagagga 310

                                                                       
Query: 181 atggaggatgcaatcaaggaaatgcatggacgggaaattggtgatcgcatcatctcggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 atggaggatgcaatcaaggaaatgcatggacgggaaattggtgatcgcatcatctcggtc 370

                                                                       
Query: 241 aataaggcacagcccaagatgggtggtgatgatgcagaccaaggctacagaggtggtggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aataaggcacagcccaagatgggtggtgatgatgcagaccaaggctacagaggtggtggc 430

                                                                       
Query: 301 tactcatcaggtggtaggggaagctatggagctggagatagggttggacaggatgactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tactcatcaggtggtaggggaagctatggagctggagatagggttggacaggatgactgt 490

                                                                       
Query: 361 ttcaaatgtgggcgtccagggcattgggcccgagattgtcctttggcaggaggtggtggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttcaaatgtgggcgtccagggcattgggcccgagattgtcctttggcaggaggtggtggt 550

                                                                       
Query: 421 ggccgcggccgtggtggcggttcactttcttcacgtcctaggtttggaggttctggtgga 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 551 ggccgcggccgtggtggcggttcactttcttcacgtcctaggtatggaggttctggtgga 610

                                   
Query: 481 catggggatcgccttggaggtgaa 504
           ||||||||||||||||||||||||
Sbjct: 611 catggggatcgccttggaggtgaa 634


>gnl|LJGI|DC596949 similar to UniRef100_A7PHY0 Cluster: Chromosome chr13 scaffold_17,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_17, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (32%)
          Length = 558

 Score =  539 bits (272), Expect = e-153
 Identities = 278/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 579 caaatatggtagccgtgatcgctatgctagtgacaggtatcctactagtggagatcgatt 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caaatatggtagccgtgatcgctatgctagtgacaggtatcctactagtggagatcgatt 499

                                                                       
Query: 639 tgctagtgatcggtatggtggtggctcagatcattactcacaaaatggttatggcaagga 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgctagtgatcggtatggtggtggctcagatcattactcacaaaatggttatggcaagga 439

                                                                       
Query: 699 gagaggctatgaccggtatggcggtgcacgaggaggtgctgataggtatggaagtggagt 758
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagaggctatgaccggtatggcggtgcacgaggaggtgctgataggtatggaagtggagt 379

                                                                       
Query: 759 ggcagctcgagatgaaggaaggggctacaggggtaggcctggtccatatgatcgcccgag 818
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggcagctcgagatgaaggaaggggctacaggggtaggcctggtccatatgatcgcccgag 319

                                                   
Query: 819 caggggtgcccgtccatcatcattggaccgctactgattg 858
           |||||||| ||||||||||||||| |||||||||||||||
Sbjct: 318 caggggtggccgtccatcatcatttgaccgctactgattg 279