Miyakogusa Predicted Gene
- Lj5g3v2193910.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2193910.1 Non Chatacterized Hit- tr|I3SUA7|I3SUA7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain; RNA
recognition motif,RNA reco,CUFF.56923.1
(864 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59868 similar to UniRef100_A7PBA3 Cluster: Chromosome... 1400 0.0
gnl|LJGI|TC67314 similar to UniRef100_A7PC44 Cluster: Chromosome... 359 2e-98
gnl|LJGI|GO026185 similar to UniRef100_A7PBA3 Cluster: Chromosom... 72 6e-12
>gnl|LJGI|TC59868 similar to UniRef100_A7PBA3 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (82%)
Length = 1079
Score = 1400 bits (706), Expect = 0.0
Identities = 706/706 (100%)
Strand = Plus / Plus
Query: 1 atgacgatcaaaaccataaaagtcagtaatgtttccttgggagcatctgaacgagacatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 atgacgatcaaaaccataaaagtcagtaatgtttccttgggagcatctgaacgagacatt 135
Query: 61 aaggagttcttttccttttctggtgacattgaatatgttgaaatgcagagtcatgatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 aaggagttcttttccttttctggtgacattgaatatgttgaaatgcagagtcatgatgaa 195
Query: 121 cgatctcaaattgcatatgttacttttaaggattcacaaggtgctgagactgcggtatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cgatctcaaattgcatatgttacttttaaggattcacaaggtgctgagactgcggtatta 255
Query: 181 ctatcgggagcaacgatagttgatttgccagttagcatagctctggatccagattaccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctatcgggagcaacgatagttgatttgccagttagcatagctctggatccagattaccag 315
Query: 241 gttccccctgctgccttggcatcatctgaaacagagggcaaaggtcctagtggtcctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttccccctgctgccttggcatcatctgaaacagagggcaaaggtcctagtggtcctgaa 375
Query: 301 tctgctctacggaaggcagaggatgtggtcacaagcatgcttgcgaagggctttatcttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tctgctctacggaaggcagaggatgtggtcacaagcatgcttgcgaagggctttatcttg 435
Query: 361 gggaaggatgctgtcaacaaagccaagactcttgatgagaaacaccagttatcttcaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gggaaggatgctgtcaacaaagccaagactcttgatgagaaacaccagttatcttcaaca 495
Query: 421 gcctcagcaaaggtttcatcaattgaccaaaaacttgggcttactgagaaaataagtgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcctcagcaaaggtttcatcaattgaccaaaaacttgggcttactgagaaaataagtgcc 555
Query: 481 ggtgcttcagttgtgagtgccggtgcttcagttgtgactgacagagttcgagaagtggac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggtgcttcagttgtgagtgccggtgcttcagttgtgactgacagagttcgagaagtggac 615
Query: 541 caaaagtttcaggtttcagagaagaccaaatcagcatttgcagttgcagaacagaaagtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caaaagtttcaggtttcagagaagaccaaatcagcatttgcagttgcagaacagaaagtc 675
Query: 601 agtactgcagggtctgctataatgaagaatcgctatgtactcactggggctacctgggta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agtactgcagggtctgctataatgaagaatcgctatgtactcactggggctacctgggta 735
Query: 661 acaggtgcttttagtaaggttgctaaggcagctggggatgtaggac 706
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 acaggtgcttttagtaaggttgctaaggcagctggggatgtaggac 781
Score = 198 bits (100), Expect = 4e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 765 ccagtatgcacatgtcctttctgagtccccaaaagctgcagcaacaagtgaggtgcactc 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ccagtatgcacatgtcctttctgagtccccaaaagctgcagcaacaagtgaggtgcactc 899
Query: 825 ttccaagcctgctcctgctcagggcttgatcctttgattt 864
||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ttccaagcctgctcctgctcagggcttgatcctttgattt 939
>gnl|LJGI|TC67314 similar to UniRef100_A7PC44 Cluster: Chromosome chr2 scaffold_11,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_11, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (54%)
Length = 618
Score = 359 bits (181), Expect = 2e-98
Identities = 406/481 (84%)
Strand = Plus / Plus
Query: 19 aaagtcagtaatgtttccttgggagcatctgaacgagacattaaggagttcttttccttt 78
|||||| |||||||||||||||||||| |||| |||||||| |||||||||||||| |||
Sbjct: 118 aaagtctgtaatgtttccttgggagcaactgagcgagacataaaggagttcttttctttt 177
Query: 79 tctggtgacattgaatatgttgaaatgcagagtcatgatgaacgatctcaaattgcatat 138
|||||||| ||||||||||| ||| |||| ||||||||||| ||||| |||||||| |||
Sbjct: 178 tctggtgatattgaatatgtcgaactgcacagtcatgatgagcgatcacaaattgcttat 237
Query: 139 gttacttttaaggattcacaaggtgctgagactgcggtattactatcgggagcaacgata 198
||||| || |||||||| || || ||||||||||| ||| | |||||||||||||| |||
Sbjct: 238 gttaccttcaaggattcgcagggagctgagactgcagtactgctatcgggagcaacaata 297
Query: 199 gttgatttgccagttagcatagctctggatccagattaccaggttccccctgctgccttg 258
|||||| || |||||| ||| || |||||||| ||||||| |||| |||||||| |||
Sbjct: 298 gttgatatgtcagttacaataactttggatccaacttaccagcttccacctgctgctttg 357
Query: 259 gcatcatctgaaacagagggcaaaggtcctagtggtcctgaatctgctctacggaaggca 318
||||||||| || ||| | ||| |||| |||| ||||||||||| | | |||||||
Sbjct: 358 acatcatctgtaaaagaaagtgaagctcctgctggtgctgaatctgctttgcagaaggca 417
Query: 319 gaggatgtggtcacaagcatgcttgcgaagggctttatcttggggaaggatgctgtcaac 378
||||||||||| | || ||||| || ||||| || ||||| ||||| |||||||| ||
Sbjct: 418 gaggatgtggtttccagtatgctagccaagggtttcatcttagggaaagatgctgttcac 477
Query: 379 aaagccaagactcttgatgagaaacaccagttatcttcaacagcctcagcaaaggtttca 438
||||| |||||| | |||||||| | ||||||||||||||||| || ||||| ||| ||
Sbjct: 478 aaagctaagactttcgatgagaagcttcagttatcttcaacagcatcggcaaaagttgca 537
Query: 439 tcaattgaccaaaaacttgggcttactgagaaaataagtgccggtgcttcagttgtgagt 498
|| ||||||| ||| ||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct: 538 tcttttgaccagaaagttgggcttagtgagaaaattagtgctggtgcttcagttgtgagt 597
Query: 499 g 499
|
Sbjct: 598 g 598
>gnl|LJGI|GO026185 similar to UniRef100_A7PBA3 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 321
Score = 71.9 bits (36), Expect = 6e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 793 ccaaaagctgcagcaacaagtgaggtgcactcttccaagcctgctcctgctcagggcttg 852
|||||||| |||||| |||||||| | ||||||||||||||||||||||| || |||
Sbjct: 118 ccaaaagcagcagcagcaagtgagcactagtcttccaagcctgctcctgctcaaggtttg 177
Query: 853 atcctttgattt 864
||||||||||||
Sbjct: 178 atcctttgattt 189
Score = 56.0 bits (28), Expect = 4e-07
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 657 ggtaacaggtgcttttagtaaggttgctaaggcagctggggatgtagg 704
|||||||||| ||||||||| |||| |||||||||||||||| |||||
Sbjct: 1 ggtaacaggt-cttttagtagggttactaaggcagctggggaagtagg 47