Miyakogusa Predicted Gene
- Lj5g3v2169560.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2169560.2 Non Chatacterized Hit- tr|B9SJY8|B9SJY8_RICCO
ATP-dependent RNA helicase, putative OS=Ricinus
commun,72.74,0,SUBFAMILY NOT NAMED,NULL; ATP-DEPENDENT RNA
HELICASE,NULL; no description,NULL; seg,NULL; P-loop con,CUFF.56833.2
(2079 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS318755 similar to UniRef100_A7P3F8 Cluster: Chromosom... 1304 0.0
gnl|LJGI|DC598572 644 0.0
gnl|LJGI|TC57832 similar to UniRef100_UPI0000197023 Cluster: hel... 96 1e-18
gnl|LJGI|AV407363 homologue to UniRef100_A7QXE2 Cluster: Chromos... 64 4e-09
>gnl|LJGI|FS318755 similar to UniRef100_A7P3F8 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (26%)
Length = 812
Score = 1304 bits (658), Expect = 0.0
Identities = 673/678 (99%), Gaps = 5/678 (0%)
Strand = Plus / Plus
Query: 1407 tagaacttattttttggagaacattctcgaaatgacgggctatagattgactccttataa 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagaacttattttttggagaacattctcgaaatgacgggctatagattgactccttataa 60
Query: 1467 tcaaattgatgattatggtcaagaaaggatgtggaaaatgaacaaacaggctccaagaaa 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaaattgatgattatggtcaagaaaggatgtggaaaatgaacaaacaggctccaagaaa 120
Query: 1527 gaggaaaagccaaattgcttccactgtagaggatgcaattagagctgctgatttcaaaga 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaggaaaagccaaattgcttccactgtagaggatgcaattagagctgctgatttcaaaga 180
Query: 1587 ttacagcccacagacacaggaatctttgtcatgttggaatccagactgtataggttttag 1646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttacagcccacagacacaggaatctttgtcatgttggaatccagactgtataggttttag 240
Query: 1647 tctcattgaatatatcttatgcaatatttgtgaaaatgaaaggcctggtgctgttttggt 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctcattgaatatatcttatgcaatatttgtgaaaatgaaaggcctggtgctgttttggt 300
Query: 1707 tttcatgactggatgggatgatataagctctctgaaagagaagctcctgagaaataatgt 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcatgactggatgggatgatataagctctctgaaagagaagctcctgagaaataatgt 360
Query: 1767 attgggagatccaaatcgtgttttgttgcttgcatgtcatggctcaatggctagttctga 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgggagatccaaatcgtgttttgttgcttgcatgtcatggctcaatggctagttctga 420
Query: 1827 gcagaggttaatattcgaagagcctgaagatggagttagaaaaatagtgctcgcaacaaa 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcagaggttaatattcgaagagcctgaagatggagttagaaaaatagtgctcgcaacaaa 480
Query: 1887 tattgctgaaacgagtatcacaatcaatgatgttgtttttgttctagactgcggaaaggc 1946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattgctgaaacgagtatcacaatcaatgatgttgtttttgttctagactgcggaaaggc 540
Query: 1947 aaaagaaacatcatatgatgcactgaataacacgccttgtttgcttcctacatggatctc 2006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaagaaacatcatatgatgcactgaataacacgccttgtttgcttcctacatggatctc 600
Query: 2007 taaggtttctgctcaacaa-----aggaagagctggtcgcgttcaaccgggagagtgtta 2061
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 601 taaggtttctgctcaacaaagaagaggaagagctggtcgcgttcaaccgggagagtgtta 660
Query: 2062 ccatctctatcctagatg 2079
||||||||||||||||||
Sbjct: 661 ccatctctatcctagatg 678
>gnl|LJGI|DC598572
Length = 545
Score = 644 bits (325), Expect = 0.0
Identities = 328/329 (99%)
Strand = Plus / Plus
Query: 164 tttcccctaagctcacacaaaaccctaccccccttaaaaccccgtttctcgagcaagctc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tttcccctaagctcacacaaaaccctaccccccttaaaaccccgtttctcgagcaagctc 276
Query: 224 ctaacaacacgaactcgcgcttcgtttctgcttacgacgacgtcgtttccgatgattgtt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctaacaacacgaactcgcgcttcgtttctgcttacgacgacgtcgtttccgatgattgtt 336
Query: 284 tcgatcgtgaatttcagattccactcccttcatcactaccgagtgatttccccaatgata 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcgatcgtgaatttcagattccactcccttcatcactaccgagtgatttccccaatgata 396
Query: 344 acattgctgagtggaagaggaaactaagcatgctcttaaatgacaagagtaagcaggagg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acattgctgagtggaagaggaaactaagcatgctcttaaatgacaagagtaagcaggagg 456
Query: 404 tgatttcgcgggagaaaaaggataggcatgatttcgagcaaatagcggttttggcgaccg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgatttcgcgggagaaaaaggataggcatgatttcgagcaaatagcggttttggcgaccg 516
Query: 464 aaatgggattgtatagccataagtacacg 492
| |||||||||||||||||||||||||||
Sbjct: 517 atatgggattgtatagccataagtacacg 545
Score = 188 bits (95), Expect = 1e-46
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 atgctccccactccgcaacccacttccttcccaaacctctcttctcacctcccctttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 atgctccccactccgcaacccacttccttcccaaacctctcttctcacctcccctttctc 113
Query: 61 cccatgaaggaccgcccctatggcgccgtttacgt 95
|||||||||||||||||||||||||||||||||||
Sbjct: 114 cccatgaaggaccgcccctatggcgccgtttacgt 148
>gnl|LJGI|TC57832 similar to UniRef100_UPI0000197023 Cluster: helicase
domain-containing protein; n=1; Arabidopsis thaliana|Rep:
helicase domain-containing protein - Arabidopsis
thaliana, partial (23%)
Length = 828
Score = 95.6 bits (48), Expect = 1e-18
Identities = 162/200 (81%)
Strand = Plus / Plus
Query: 1795 cttgcatgtcatggctcaatggctagttctgagcagaggttaatattcgaagagcctgaa 1854
|||||||| ||||| || ||||| ||| ||||||||| ||| ||||| ||| | || |||
Sbjct: 246 cttgcatgccatggttctatggccagtgctgagcagaagttgatatttgaaaatccagaa 305
Query: 1855 gatggagttagaaaaatagtgctcgcaacaaatattgctgaaacgagtatcacaatcaat 1914
| || || || ||||| || || || || || || || || || ||||| || ||||||
Sbjct: 306 ggaggggtgaggaaaattgttcttgctactaacatggcagagactagtattaccatcaat 365
Query: 1915 gatgttgtttttgttctagactgcggaaaggcaaaagaaacatcatatgatgcactgaat 1974
|||||||| ||||| |||| || ||||| |||||||| ||||||||||||||| | |||
Sbjct: 366 gatgttgtctttgtggtagattgtggaaaagcaaaagagacatcatatgatgcaataaat 425
Query: 1975 aacacgccttgtttgcttcc 1994
||||| ||||||||||||||
Sbjct: 426 aacactccttgtttgcttcc 445
Score = 56.0 bits (28), Expect = 9e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1681 aatgaaaggcctggtgctgttttggttttcatgactggatgggatgatataa 1732
||||||||||| |||||| || |||| || |||||||| |||||||||||||
Sbjct: 132 aatgaaaggccaggtgctattctggtatttatgactggttgggatgatataa 183
>gnl|LJGI|AV407363 homologue to UniRef100_A7QXE2 Cluster: Chromosome undetermined
scaffold_221, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_221, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(12%)
Length = 425
Score = 63.9 bits (32), Expect = 4e-09
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1211 taactcatgttattgtggatgaaattcatgaacgtgggatgaatgaagattt 1262
|||| |||||| ||||||||||||||||||| || || ||||||||||||||
Sbjct: 235 taacccatgtttttgtggatgaaattcatgagcgaggcatgaatgaagattt 286