Miyakogusa Predicted Gene

Lj5g3v2167340.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2167340.1 tr|F2DRD2|F2DRD2_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,31.68,7e-19,FAMILY NOT
NAMED,NULL,CUFF.56805.1
         (489 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62613 weakly similar to UniRef100_A7P3I2 Cluster: Chr...    82   4e-15

>gnl|LJGI|TC62613 weakly similar to UniRef100_A7P3I2 Cluster: Chromosome chr1
           scaffold_5, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (22%)
          Length = 708

 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 110/133 (82%)
 Strand = Plus / Plus

                                                                       
Query: 339 aatgttgcctttatgcattccctttgactctcagtatcaagagcgcccatgtgaagatca 398
           |||| |||||||||||  |||||||||||| |||  |||||||| || |||   ||||||
Sbjct: 14  aatgatgcctttatgctatccctttgactcccagcttcaagagcaccaatgctcagatca 73

                                                                       
Query: 399 agaaatttcttctgccaatgcttcgatggtttggaagaaaagtgagtgtgaggtatgtga 458
           || | |||| ||||||||||| || |||||||||||||| | ||| ||||| |||| |||
Sbjct: 74  agcagtttcctctgccaatgcatccatggtttggaagaacaatgaatgtgaagtatctga 133

                        
Query: 459 ttctagtatttgc 471
            ||| ||||||||
Sbjct: 134 atctggtatttgc 146