Miyakogusa Predicted Gene

Lj5g3v2166220.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2166220.1 tr|G7IAT6|G7IAT6_MEDTR E3 ubiquitin-protein
ligase MARCH2 OS=Medicago truncatula GN=MTR_1g108490
PE=,80.67,0,ZF_RING_CH,Zinc finger, RING-CH-type; RING/U-box,NULL;
seg,NULL; no description,Zinc finger, RING/FY,CUFF.56786.1
         (813 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68817 similar to UniRef100_A7Q0L7 Cluster: Chromosome...    54   1e-06

>gnl|LJGI|TC68817 similar to UniRef100_A7Q0L7 Cluster: Chromosome chr7 scaffold_42,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_42, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (67%)
          Length = 900

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 274 atacagcgatggtgtaatgagaagggtgacaccacctgtgagatatgccaccagccattc 333
           |||||| ||||||| || ||||| ||  |||| || ||||| ||||| | ||||| || |
Sbjct: 244 atacagagatggtgcaacgagaaaggaaacacaacatgtgaaatatgtctccagcaatac 303

                                      
Query: 334 aagcctggttatacagctcctcctcca 360
           || ||||| ||||||||||||||||||
Sbjct: 304 aaacctggatatacagctcctcctcca 330