Miyakogusa Predicted Gene
- Lj5g3v2113560.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2113560.3 Non Chatacterized Hit- tr|G3VVP8|G3VVP8_SARHA
Uncharacterized protein OS=Sarcophilus harrisii
GN=TBC,35.19,0.61,seg,NULL; coiled-coil,NULL,CUFF.56815.3
(285 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63245 homologue to UniRef100_A7P0K3 Cluster: Chromoso... 341 1e-93
gnl|LJGI|TC73550 163 7e-40
gnl|LJGI|TC82310 60 8e-09
gnl|LJGI|FS318070 similar to UniRef100_A7P0K3 Cluster: Chromosom... 54 5e-07
gnl|LJGI|BP030023 weakly similar to UniRef100_A9XIL8 Cluster: NA... 50 7e-06
gnl|LJGI|BP029320 weakly similar to UniRef100_A9XIL8 Cluster: NA... 50 7e-06
>gnl|LJGI|TC63245 homologue to UniRef100_A7P0K3 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (3%)
Length = 686
Score = 341 bits (172), Expect = 1e-93
Identities = 196/208 (94%)
Strand = Plus / Plus
Query: 1 atgggttcttcttcatcagtaaaagaaaatgagcacatattggacctgagcctacaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atgggttcttcttcatcagtaaaagaaaatgagcacatattggacctgagcctacaactg 538
Query: 61 atagatttgttgttgttatggttgggaagtgcannnnnnnnnnnnggaaacaaaagatat 120
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 539 atagatttgttgttgttatggttgggaagtgcatttttattttttggaaacaaaagatat 598
Query: 121 attgcaataatcaagagccaaaaagctcaagaacagtacaagcaagccaaggaggaacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 attgcaataatcaagagccaaaaagctcaagaacagtacaagcaagccaaggaggaacta 658
Query: 181 cacaaagtgaggaccaccaaggctagag 208
||||||||||||||||||||||||||||
Sbjct: 659 cacaaagtgaggaccaccaaggctagag 686
>gnl|LJGI|TC73550
Length = 1238
Score = 163 bits (82), Expect = 7e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 atgggttcttcttcatcagtaaaagaaaatgagcacatattggacctgagcctacaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atgggttcttcttcatcagtaaaagaaaatgagcacatattggacctgagcctacaactg 532
Query: 61 atagatttgttgttgttatggt 82
||||||||||||||||||||||
Sbjct: 533 atagatttgttgttgttatggt 554
Score = 161 bits (81), Expect = 3e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 106 ggaaacaaaagatatattgcaataatcaagagccaaaaagctcaagaacagtacaagcaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1158 ggaaacaaaagatatattgcaataatcaagagccaaaaagctcaagaacagtacaagcaa 1217
Query: 166 gccaaggaggaactacacaaa 186
|||||||||||||||||||||
Sbjct: 1218 gccaaggaggaactacacaaa 1238
>gnl|LJGI|TC82310
Length = 1200
Score = 60.0 bits (30), Expect = 8e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 31 gagcacatattggacctgagcctacaactgatagatttgttgttgttatg 80
|||||||| ||||||| || |||||||| |||||||||||| ||||||||
Sbjct: 664 gagcacatgttggaccagaacctacaaccgatagatttgttattgttatg 713
>gnl|LJGI|FS318070 similar to UniRef100_A7P0K3 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 723
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 33 gcacatattggacctgagcctacaactgatagatttgttgttg 75
||||| ||||| || |||||||||||||| |||||||||||||
Sbjct: 681 gcacacattgggccagagcctacaactgacagatttgttgttg 723
>gnl|LJGI|BP030023 weakly similar to UniRef100_A9XIL8 Cluster: NADH dehydrogenase
subunit 4; n=1; Oxya chinensis|Rep: NADH dehydrogenase
subunit 4 - Oxya chinensis, partial (5%)
Length = 538
Score = 50.1 bits (25), Expect = 7e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 141 aaaagctcaagaacagtacaagcaa-gccaaggaggaactacacaaagtgaggaccacca 199
|||||||||||| |||||| |||| ||||||| ||| | ||||||||||| |||| |||
Sbjct: 25 aaaagctcaagagcagtacgggcaaagccaagggggaccaacacaaagtgaagaccgcca 84
Query: 200 aggctagag 208
|||| ||||
Sbjct: 85 aggccagag 93
>gnl|LJGI|BP029320 weakly similar to UniRef100_A9XIL8 Cluster: NADH dehydrogenase
subunit 4; n=1; Oxya chinensis|Rep: NADH dehydrogenase
subunit 4 - Oxya chinensis, partial (5%)
Length = 316
Score = 50.1 bits (25), Expect = 7e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 141 aaaagctcaagaacagtacaagcaa-gccaaggaggaactacacaaagtgaggaccacca 199
|||||||||||| |||||| |||| ||||||| ||| | ||||||||||| |||| |||
Sbjct: 19 aaaagctcaagagcagtacgggcaaagccaagggggaccaacacaaagtgaagaccgcca 78
Query: 200 aggctagag 208
|||| ||||
Sbjct: 79 aggccagag 87