Miyakogusa Predicted Gene

Lj5g3v2113410.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2113410.1 Non Chatacterized Hit- tr|D8U3J1|D8U3J1_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,39.18,6e-18,DUF3611,Protein of unknown function DUF3611;
seg,NULL,CUFF.56722.1
         (870 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64865 similar to UniRef100_Q09S70 Cluster: Tic21; n=1...  1717   0.0  

>gnl|LJGI|TC64865 similar to UniRef100_Q09S70 Cluster: Tic21; n=1; Pisum sativum|Rep:
           Tic21 - Pisum sativum (Garden pea), partial (94%)
          Length = 1393

 Score = 1717 bits (866), Expect = 0.0
 Identities = 869/870 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcaaacgcttcttttgccggcaccatgcgccggcaagttcacggcggcgccaccacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  atgcaaacgcttcttttgccggcaccatgcgccggcaagttcacggcggcgccaccacct 148

                                                                       
Query: 61  gcagttcctcattcagtctccgccgtctccgcccatcgtctctctcgaccatttctccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gcagttcctcattcagtctccgccgtctccgcccatcgtctctctcgaccatttctccgg 208

                                                                       
Query: 121 ccgaattcactcccctcactccctctcaaattgactcctccttcttcttcctctttctgt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcgaattcactcccctcactccctctcaaattgactcctccttcttcttcctctttctgt 268

                                                                       
Query: 181 tccgtcacttctcatcgaccacggaatcttccgttcaccgtaaccgcttcttcccaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccgtcacttctcatcgaccacggaatcttccgttcaccgtaaccgcttcttcccaggtg 328

                                                                       
Query: 241 tctccagctttcactccctccaacggtgaatcagaaaaagccaaactcgatcaggtggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctccagctttcactccctccaacggtgaatcagaaaaagccaaactcgatcaggtggcg 388

                                                                       
Query: 301 aagagattggagaagacagcgaggtatttcaagcgtttgggtagcttagggttttggggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aagagattggagaagacagcgaggtatttcaagcgtttgggtagcttagggttttggggt 448

                                                                       
Query: 361 cagctagtgtgcacggtgatctcagccgtcattctctcgttttcggttgttgtcaccggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cagctagtgtgcacggtgatctcagccgtcattctctcgttttcggttgttgtcaccggg 508

                                                                       
Query: 421 aaggtaacatcgccggctacgttttatgctactgccggtggaatagtggctgggttcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaggtaacatcgccggctacgttttatgctactgccggtggaatagtggctgggttcatt 568

                                                                       
Query: 481 tctgtgttctggtcctttggctatattcgtctctctgagaagcttagaaaaactgcaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tctgtgttctggtcctttggctatattcgtctctctgagaagcttagaaaaactgcaaat 628

                                                                       
Query: 541 caacctaccaaggcaccccctcgcgctgatgtggtgaaaagcttgcaaaatggtattgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 caacctaccaaggcaccccctcgcgctgatgtggtgaaaagcttgcaaaatggtattgta 688

                                                                       
Query: 601 gtgaaccttctggggatgggtgctgctatccttgggatgcaagccacggttggactgtta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtgaaccttctggggatgggtgctgctatccttgggatgcaagccacggttggactgtta 748

                                                                       
Query: 661 gttgcaaaggctctcacttccgctgccaatccatattatcagggaattgctcctggttct 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gttgcaaaggctctcacttccgctgccaatccatattatcagggaattgctcctggttct 808

                                                                       
Query: 721 agccctgttctcgcattggatgtatttttggtgcaggcttcagcgaatactattctttca 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 agccctgttctcgcattggatgtatttttggtgcaggcttcagcgaatactattctttca 868

                                                                       
Query: 781 catttccttggacttgttttctcactggaattattgagatctgtcacattacctccctca 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 catttccttggacttgttttctcactggaattattgagatctgtcacattacctccctca 928

                                         
Query: 841 gaagctcttccatttcctaagtttgcgtaa 870
           ||||||||||||||||||||||||||||||
Sbjct: 929 gaagctcttccatttcctaagtttgcgtaa 958