Miyakogusa Predicted Gene

Lj5g3v2088320.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2088320.1 tr|B9I9Y1|B9I9Y1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_572762 PE=4 SV=1,96,0.000003,
,CUFF.56646.1
         (277 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC593300                                                     143   6e-34
gnl|LJGI|FS335722 similar to UniRef100_Q9M2X1 Cluster: ADP-RIBOS...   141   3e-33
gnl|LJGI|DC597350 homologue to UniRef100_A7PRT8 Cluster: Chromos...    54   5e-07

>gnl|LJGI|DC593300 
          Length = 590

 Score =  143 bits (72), Expect = 6e-34
 Identities = 72/72 (100%)
 Strand = Plus / Minus

                                                                       
Query: 153 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcccgagttcgattc 365

                       
Query: 213 tcggaatgcccc 224
           ||||||||||||
Sbjct: 364 tcggaatgcccc 353


>gnl|LJGI|FS335722 similar to UniRef100_Q9M2X1 Cluster: ADP-RIBOSYLATION FACTOR-like
           protein; n=1; Arabidopsis thaliana|Rep: ADP-RIBOSYLATION
           FACTOR-like protein - Arabidopsis thaliana (Mouse-ear
           cress), partial (35%)
          Length = 501

 Score =  141 bits (71), Expect = 3e-33
 Identities = 86/91 (94%)
 Strand = Plus / Minus

                                                                       
Query: 141 tcatctaagcttgggcatttggtctagtggtatgattctcgctttgggtgcgagaggtcc 200
           |||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct: 331 tcatctcagcttgggcatttggtttagtggtatgattcttgctttgggtgcaagaggtcc 272

                                          
Query: 201 cgagttcgattctcggaatgccccaattttt 231
           |||||||||||||||||||||||| ||||||
Sbjct: 271 cgagttcgattctcggaatgcccctattttt 241


>gnl|LJGI|DC597350 homologue to UniRef100_A7PRT8 Cluster: Chromosome chr14
           scaffold_27, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (51%)
          Length = 591

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 158 tttggtctagtggtatgattctcgctt 184
           |||||||||||||||||||||||||||
Sbjct: 29  tttggtctagtggtatgattctcgctt 3