Miyakogusa Predicted Gene

Lj5g3v2046140.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2046140.1 tr|D7M8H6|D7M8H6_ARALL SEC14 cytosolic factor
family protein OS=Arabidopsis lyrata subsp. lyrata
GN=,32.98,1e-18,CRAL_TRIO,CRAL-TRIO domain; no description,CRAL/TRIO,
N-terminal domain; no description,CRAL-TRIO do,CUFF.56548.1
         (1233 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP048162 homologue to UniRef100_A7NWM3 Cluster: Chromos...   285   3e-76

>gnl|LJGI|BP048162 homologue to UniRef100_A7NWM3 Cluster: Chromosome chr5 scaffold_2,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr5 scaffold_2, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (5%)
          Length = 372

 Score =  285 bits (144), Expect = 3e-76
 Identities = 238/264 (90%), Gaps = 4/264 (1%)
 Strand = Plus / Minus

                                                                        
Query: 974  ccccgctgccgcaacgcgtcacggcgcctcacaagacttccttcctccagtccccagcta 1033
            |||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||| ||||
Sbjct: 366  ccccgctgccgccacgcgtcccggcgcctcaccagacttccttcctcccgtcccccgcta 307

                                                                        
Query: 1034 cattcttccggcgcgaaagcgtcggaggaggaaaaaca-gagaggtgccgggaatcattc 1092
            | ||||||||||||||||||||||  |||||||||||| ||||||||||||| |||| ||
Sbjct: 306  ccttcttccggcgcgaaagcgtcgagggaggaaaaacacgagaggtgccggggatcaatc 247

                                                                        
Query: 1093 tcgccgtacgtcaaattctaccgaaggccgtacaacgagatgatttaccggtcaaagatg 1152
            |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct: 246  tcgccgtacgtccaattgtaccggaggccgtaccacgagatgatttaccggtccaagatg 187

                                                                        
Query: 1153 aggccaccactcggcggcctca-tctccatcgtctccccacacattagaagacgcca-ca 1210
            ||||| || ||||||||||||| ||||| |||||||||| |||||||| |||||||| | 
Sbjct: 186  aggccccccctcggcggcctcactctccctcgtctccccccacattaggagacgccaccc 127

                                    
Query: 1211 tttcagtttctca-gcgttactaa 1233
            ||||||||| ||| ||||||||||
Sbjct: 126  tttcagtttttcacgcgttactaa 103