Miyakogusa Predicted Gene

Lj5g3v2046030.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v2046030.1 tr|B9HVZ8|B9HVZ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_660193 PE=4
SV=1,40.8,3e-18,RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED,NULL; XS,XS
domain; seg,NULL,CUFF.56539.1
         (1431 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC65423 similar to UniRef100_A7NWN1 Cluster: Chromosome...   900   0.0  
gnl|LJGI|TC76786 homologue to UniRef100_A7NWN1 Cluster: Chromoso...   321   7e-87

>gnl|LJGI|TC65423 similar to UniRef100_A7NWN1 Cluster: Chromosome chr5 scaffold_2,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr5 scaffold_2, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (26%)
          Length = 1003

 Score =  900 bits (454), Expect = 0.0
 Identities = 463/465 (99%), Gaps = 2/465 (0%)
 Strand = Plus / Plus

                                                                        
Query: 967  ctgatcatgtggccacctttggtgatcattcataacactaataccggaaaaagtagagat 1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 2    ctgatcatgtggccacctttggtgatcattcataacactaataccggaaa--gtagagat 59

                                                                        
Query: 1027 ggtcgtatggagggtatgggaatcaaagcgatggatgctaaaattagagagcttggattt 1086
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   ggtcgtatggagggtatgggaatcaaagcgatggatgctaaaattagagagcttggattt 119

                                                                        
Query: 1087 acgggtggcaaatcaaagtcattatatggaagagaaggtcatttgggcataacactggtt 1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  acgggtggcaaatcaaagtcattatatggaagagaaggtcatttgggcataacactggtt 179

                                                                        
Query: 1147 aaatttgctggggaccagtcgggccttaaagaggctatacggcttgctgaacactttgag 1206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  aaatttgctggggaccagtcgggccttaaagaggctatacggcttgctgaacactttgag 239

                                                                        
Query: 1207 aaggaaaatcatggtcgcaaggattgggcccgtgtgcagccccaaatattaggaaaggat 1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  aaggaaaatcatggtcgcaaggattgggcccgtgtgcagccccaaatattaggaaaggat 299

                                                                        
Query: 1267 gatgagaacaatccaaaccttgtgaaggtggatgagaaaaaaggagacaaaaggaggatc 1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  gatgagaacaatccaaaccttgtgaaggtggatgagaaaaaaggagacaaaaggaggatc 359

                                                                        
Query: 1327 ttgtatggctatttaggaactgcttttgatcttgacaaagttgattttgacacaaggaag 1386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360  ttgtatggctatttaggaactgcttttgatcttgacaaagttgattttgacacaaggaag 419

                                                         
Query: 1387 aagctagtcatagagagctggagagaatacaaaccgtccatgtag 1431
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  aagctagtcatagagagctggagagaatacaaaccgtccatgtag 464


>gnl|LJGI|TC76786 homologue to UniRef100_A7NWN1 Cluster: Chromosome chr5 scaffold_2,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_2, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (7%)
          Length = 517

 Score =  321 bits (162), Expect = 7e-87
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 238 ccagcctacggcttccacatgctcgagcgccgaaccatcgtcctcgccgacggcagcgtc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccagcctacggcttccacatgctcgagcgccgaaccatcgtcctcgccgacggcagcgtc 415

                                                                       
Query: 298 cgctcctacttcgctctcccccctgattaccaggatttcgcgcccccaccccgccacctc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cgctcctacttcgctctcccccctgattaccaggatttcgcgcccccaccccgccacctc 475

                                                     
Query: 358 gaccgcttcgacatgcgcttccctccacgccccggttttcgg 399
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaccgcttcgacatgcgcttccctccacgccccggttttcgg 517



 Score =  220 bits (111), Expect = 2e-56
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggccggcggtaaccaccacaagccctctccatccaaccgcaaatcgcgttgggaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atggccggcggtaaccaccacaagccctctccatccaaccgcaaatcgcgttgggaggcc 178

                                                              
Query: 61  aactcatcctccgccaccgccgccgcctccaacaccaaatctccatcggat 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aactcatcctccgccaccgccgccgcctccaacaccaaatctccatcggat 229