Miyakogusa Predicted Gene
- Lj5g3v2045000.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2045000.1 Non Chatacterized Hit- tr|I3S5R5|I3S5R5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.06,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION
SUBUNIT (SOH1),Media,CUFF.56488.1
(624 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57241 homologue to UniRef100_Q8VYB1 Cluster: Mediator... 1237 0.0
gnl|LJGI|BP073842 72 5e-12
>gnl|LJGI|TC57241 homologue to UniRef100_Q8VYB1 Cluster: Mediator of RNA polymerase
II transcription subunit 31; n=1; Arabidopsis
thaliana|Rep: Mediator of RNA polymerase II
transcription subunit 31 - Arabidopsis thaliana
(Mouse-ear cress), partial (63%)
Length = 962
Score = 1237 bits (624), Expect = 0.0
Identities = 624/624 (100%)
Strand = Plus / Plus
Query: 1 atggcctcaaaaaccgatggcgagaattcaaccgataccactccatcattgccaaagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atggcctcaaaaaccgatggcgagaattcaaccgataccactccatcattgccaaagaat 198
Query: 61 atatacaaagatccagatgatgggcgacaacggtttttgcttgaattggaatttgttcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atatacaaagatccagatgatgggcgacaacggtttttgcttgaattggaatttgttcaa 258
Query: 121 tgccttgctaatcctacctatatccattatttggctcagaaccgatattttgaggatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgccttgctaatcctacctatatccattatttggctcagaaccgatattttgaggatgaa 318
Query: 181 gcattcattggatacttaaagtatcttcaatattggcaacgccctgagtatatcaaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcattcattggatacttaaagtatcttcaatattggcaacgccctgagtatatcaaattt 378
Query: 241 attatgtatcctcattgcctctattttcttgagcgtcttcagaatgcaaattttcgcagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attatgtatcctcattgcctctattttcttgagcgtcttcagaatgcaaattttcgcagt 438
Query: 301 gcaatggctcatcctaataataaggagctggcacatagacaacaattttatttctggaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcaatggctcatcctaataataaggagctggcacatagacaacaattttatttctggaag 498
Query: 361 aactataggaacaatcggctaaaacacattttaccaagatcacttcctgaacctagtgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aactataggaacaatcggctaaaacacattttaccaagatcacttcctgaacctagtgca 558
Query: 421 actcctgcacttcctgctcctgcgtcaacaccaatacagccacctgtgcctgcactgcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 actcctgcacttcctgctcctgcgtcaacaccaatacagccacctgtgcctgcactgcca 618
Query: 481 ccagcacctgcgaccaatgttgccgtgacagcatcatctgctcaagctccttctcccatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccagcacctgcgaccaatgttgccgtgacagcatcatctgctcaagctccttctcccatg 678
Query: 541 ccatatggtatacctcctggctctggtcttgctaaaagtgacatgaggaatcctacagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccatatggtatacctcctggctctggtcttgctaaaagtgacatgaggaatcctacagtt 738
Query: 601 gatagaaggaggagaaagtgaatg 624
||||||||||||||||||||||||
Sbjct: 739 gatagaaggaggagaaagtgaatg 762
>gnl|LJGI|BP073842
Length = 396
Score = 71.9 bits (36), Expect = 5e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 589 aatcctacagttgatagaaggaggagaaagtgaatg 624
||||||||||||||||||||||||||||||||||||
Sbjct: 396 aatcctacagttgatagaaggaggagaaagtgaatg 361