Miyakogusa Predicted Gene
- Lj5g3v2033940.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2033940.1 tr|Q32ZJ5|Q32ZJ5_SOLTU RAR1-like protein
(Fragment) OS=Solanum tuberosum PE=4
SV=1,68.49,5e-19,CHORD,Cysteine/histidine-rich domain; RAR1,NULL;
CYSTEINE AND HISTIDINE-RICH DOMAIN (CHORD)-CONTAINI,CUFF.56483.1
(558 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68565 similar to UniRef100_Q9SE33 Cluster: RAR1; n=1;... 1106 0.0
gnl|LJGI|FS321444 similar to UniRef100_Q9SE33 Cluster: RAR1; n=1... 1005 0.0
gnl|LJGI|DC595022 similar to UniRef100_Q9SE34 Cluster: Rar1; n=1... 121 5e-27
>gnl|LJGI|TC68565 similar to UniRef100_Q9SE33 Cluster: RAR1; n=1; Arabidopsis
thaliana|Rep: RAR1 - Arabidopsis thaliana (Mouse-ear
cress), partial (80%)
Length = 1097
Score = 1106 bits (558), Expect = 0.0
Identities = 558/558 (100%)
Strand = Plus / Plus
Query: 1 atgaaagaatggagttgttgcaagaagagaagccatgattttagtttgtttttacaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atgaaagaatggagttgttgcaagaagagaagccatgattttagtttgtttttacaaatt 338
Query: 61 cctggatgtaagacaggaaaacatacaacagagaagcaagtaattgcaccagttaagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cctggatgtaagacaggaaaacatacaacagagaagcaagtaattgcaccagttaagaag 398
Query: 121 aaccctgtgcccactccaactgcagctccttcaaccaatgcatcagcgaaggactcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaccctgtgcccactccaactgcagctccttcaaccaatgcatcagcgaaggactcctgt 458
Query: 181 tcgaggtgtcggcagggtttcttttgctcagatcacggttcacaaagcaaagctgtgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcgaggtgtcggcagggtttcttttgctcagatcacggttcacaaagcaaagctgtgaat 518
Query: 241 attgttggagacaaatctgttaatcgtgctggagatgcccctgctgtaaacagttccatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 attgttggagacaaatctgttaatcgtgctggagatgcccctgctgtaaacagttccatt 578
Query: 301 gttcaggctccgaaacctcctaagaaaatagttgatataaatgaaccccaaacatgcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gttcaggctccgaaacctcctaagaaaatagttgatataaatgaaccccaaacatgcaaa 638
Query: 361 aataaagggtgtggacaaactttcaaggaaaaggataatcatgacactgcatgcagctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aataaagggtgtggacaaactttcaaggaaaaggataatcatgacactgcatgcagctac 698
Query: 421 catcctggccctgctgtttttcacgatcgaatgagagggtggaagtgctgtgatgttcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 catcctggccctgctgtttttcacgatcgaatgagagggtggaagtgctgtgatgttcat 758
Query: 481 gtaaaagaatttgatgagtttataagcattcctccatgcacaaagggatggcataacgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gtaaaagaatttgatgagtttataagcattcctccatgcacaaagggatggcataacgct 818
Query: 541 gatccagattcttgatca 558
||||||||||||||||||
Sbjct: 819 gatccagattcttgatca 836
>gnl|LJGI|FS321444 similar to UniRef100_Q9SE33 Cluster: RAR1; n=1; Arabidopsis
thaliana|Rep: RAR1 - Arabidopsis thaliana (Mouse-ear
cress), partial (75%)
Length = 786
Score = 1005 bits (507), Expect = 0.0
Identities = 520/524 (99%), Gaps = 4/524 (0%)
Strand = Plus / Plus
Query: 1 atgaaagaatggagttgttgcaagaagagaagccatgattttagtttgtttttacaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgaaagaatggagttgttgcaagaagagaagccatgattttagtttgtttttacaaatt 322
Query: 61 cctggatgtaagacaggaaaacatacaacagagaagcaagtaattgcaccagttaagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cctggatgtaagacaggaaaacatacaacagagaagcaagtaattgcaccagttaagaag 382
Query: 121 aaccctgtgcccactccaactgcagctccttcaaccaatgcatcagcgaaggactcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaccctgtgcccactccaactgcagctccttcaaccaatgcatcagcgaaggactcctgt 442
Query: 181 tcgaggtgtcggcagggtttcttttgctcagatcacggttcacaaagcaaagctgtgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcgaggtgtcggcagggtttcttttgctcagatcacggttcacaaagcaaagctgtgaat 502
Query: 241 attgttggagacaaatctgttaatcgtgctggagatgcccctgctgtaaacagttccatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attgttggagacaaatctgttaatcgtgctggagatgcccctgctgtaaacagttccatt 562
Query: 301 gttcaggctccgaaacctcctaagaaaatagttgatataaatgaaccccaaacatgcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttcaggctccgaaacctcctaagaaaatagttgatataaatgaaccccaaacatgcaaa 622
Query: 361 aataaagggtgtggacaaactttcaaggaaaaggataatcatgacactgcatgcagctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aataaagggtgtggacaaactttcaaggaaaaggataatcatgacactgcatgcagctac 682
Query: 421 catcctggccctgctgtttttcacgatcgaatgagagg----gtggaagtgctgtgatgt 476
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 683 catcctggccctgctgtttttcacgatcgaatgagaggggttgtggaagtgctgtgatgt 742
Query: 477 tcatgtaaaagaatttgatgagtttataagcattcctccatgca 520
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcatgtaaaagaatttgatgagtttataagcattcctccatgca 786
>gnl|LJGI|DC595022 similar to UniRef100_Q9SE34 Cluster: Rar1; n=1; Hordeum
vulgare|Rep: Rar1 - Hordeum vulgare (Barley), partial
(12%)
Length = 339
Score = 121 bits (61), Expect = 5e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 1 atgaaagaatggagttgttgcaagaagagaagccatgattttagtttgtttttacaaatt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 22 atgaaagaatggagttgttgccagaagagaagccatgattttagtttgtttttacaaatt 81
Query: 61 cctgg 65
|||||
Sbjct: 82 cctgg 86