Miyakogusa Predicted Gene
- Lj5g3v2030840.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2030840.1 Non Chatacterized Hit- tr|B9R9K4|B9R9K4_RICCO DNA
binding protein, putative OS=Ricinus communis GN=R,42.96,4e-18,HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix domain;
HLH,Helix-loop-helix domain; coile,CUFF.56473.1
(780 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61520 weakly similar to UniRef100_A7QGX2 Cluster: Chr... 977 0.0
gnl|LJGI|TC70129 weakly similar to UniRef100_A7QGX2 Cluster: Chr... 125 4e-28
gnl|LJGI|FS322692 weakly similar to UniRef100_A7QGX2 Cluster: Ch... 76 4e-13
>gnl|LJGI|TC61520 weakly similar to UniRef100_A7QGX2 Cluster: Chromosome chr16
scaffold_94, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr16 scaffold_94, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 877
Score = 977 bits (493), Expect = 0.0
Identities = 493/493 (100%)
Strand = Plus / Plus
Query: 149 gcaccaagagaatactttatcatagtactgctggtacgactcatgctaataactctgaag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcaccaagagaatactttatcatagtactgctggtacgactcatgctaataactctgaag 61
Query: 209 aatttaagaagaaaaagatggttcatagagagattgagaagcaaaggaggcaagaaatgg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aatttaagaagaaaaagatggttcatagagagattgagaagcaaaggaggcaagaaatgg 121
Query: 269 ctacccttcatgcctctcttagatccctcctccctctccacttcatcaagggaaagcgtt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctacccttcatgcctctcttagatccctcctccctctccacttcatcaagggaaagcgtt 181
Query: 329 ctttatctgatcagatgaatgaggtagtgaattacataaaccacctgcaaaagaacataa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctttatctgatcagatgaatgaggtagtgaattacataaaccacctgcaaaagaacataa 241
Query: 389 aagagctcagtgacaagagggatgaacttaataatctctccaatattctcaagaaggacc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aagagctcagtgacaagagggatgaacttaataatctctccaatattctcaagaaggacc 301
Query: 449 atgcatctgctagtttcactttccaccagagtgatggatgtgtgggaattgaaatcacta 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgcatctgctagtttcactttccaccagagtgatggatgtgtgggaattgaaatcacta 361
Query: 509 gtggcttcagagaggaagaagggttaccagtttcgaaattgctggaaattttgttagaag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtggcttcagagaggaagaagggttaccagtttcgaaattgctggaaattttgttagaag 421
Query: 569 aggggcttgaagttgttagttgcatttcaaccaaagttaatggaaaattactccacagta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aggggcttgaagttgttagttgcatttcaaccaaagttaatggaaaattactccacagta 481
Query: 629 tgcagtgtgaggt 641
|||||||||||||
Sbjct: 482 tgcagtgtgaggt 494
Score = 127 bits (64), Expect = 1e-28
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 717 tctaactgagctgagaaggaaaatttccaatgttattcaatcattttcatgttctgatta 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tctaactgagctgagaaggaaaatttccaatgttattcaatcattttcatgttctgatta 578
Query: 777 acta 780
||||
Sbjct: 579 acta 582
>gnl|LJGI|TC70129 weakly similar to UniRef100_A7QGX2 Cluster: Chromosome chr16
scaffold_94, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr16 scaffold_94, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (24%)
Length = 1234
Score = 125 bits (63), Expect = 4e-28
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 238 gagattgagaagcaaaggaggcaagaaatggctacccttcatgcctctcttagatccctc 297
|||||||||| | ||||||||||||| |||||| || || |||| ||||||||||||||
Sbjct: 317 gagattgagaggaaaaggaggcaagatatggcttccttttatgcatctcttagatccctt 376
Query: 298 ctccctctccacttcatcaagggaaagcgttctttatctgatcagatgaatgaggtagtg 357
|||||||| | |||||||||||||||||||| ||||||| || || ||||||| || |
Sbjct: 377 ctccctcttgagttcatcaagggaaagcgttcactatctgaacacataaatgaggcagcg 436
Query: 358 aattacataaaccacctgcaaaa 380
||||||||||| ||| |||||||
Sbjct: 437 aattacataaaacacatgcaaaa 459
>gnl|LJGI|FS322692 weakly similar to UniRef100_A7QGX2 Cluster: Chromosome chr16
scaffold_94, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr16 scaffold_94, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 772
Score = 75.8 bits (38), Expect = 4e-13
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 238 gagattgagaagcaaaggaggcaagaaatggctacccttcatgcctctcttagatccctc 297
|||||||||| | ||||||||||||| |||||| || || |||| ||||||||||||||
Sbjct: 224 gagattgagaggaaaaggaggcaagatatggcttccttttatgcatctcttagatccctt 283
Query: 298 ctccctctccacttcatcaagg 319
|||||||| | ||||||||||
Sbjct: 284 ctccctcttgagttcatcaagg 305