Miyakogusa Predicted Gene
- Lj5g3v2027300.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v2027300.1 Non Chatacterized Hit- tr|B7FHI0|B7FHI0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,27.43,0.000004,no description,Nucleotide-binding, alpha-beta
plait; RRM_1,RNA recognition motif domain;
ARGININE/SE,NODE_21991_length_1496_cov_227.554138.path2.1
(1017 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58851 similar to UniRef100_Q6R4Q7 Cluster: Splicing f... 1102 0.0
gnl|LJGI|TC72764 similar to UniRef100_Q6R4Q7 Cluster: Splicing f... 973 0.0
gnl|LJGI|BW595142 weakly similar to UniRef100_A7PY01 Cluster: Ch... 208 5e-53
gnl|LJGI|TC61003 similar to UniRef100_A7PY01 Cluster: Chromosome... 92 8e-18
gnl|LJGI|TC59976 similar to UniRef100_A7PY01 Cluster: Chromosome... 86 5e-16
>gnl|LJGI|TC58851 similar to UniRef100_Q6R4Q7 Cluster: Splicing factor-like protein;
n=1; Vitis riparia|Rep: Splicing factor-like protein -
Vitis riparia (Frost grape) (Vitis vulpina), partial
(18%)
Length = 860
Score = 1102 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 458 cacctagtccttatcgcagagaaaggggtagtcctgattatggtcgtggggccagtcctt 517
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2 cacctagtccttatcgcagagaaaggggtagtcctgattatggtcgtgggaccagtcctt 61
Query: 518 acaagagggagaggagcagccctgactatggccatggccgcagccgtagtagaagccccc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 acaagagggagaggagcagccctgactatggccatggccgcagccgtagtagaagccccc 121
Query: 578 accgcagagtgcgagctagccctgctcacgggcgtagaagccctagtccatatagaagag 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 accgcagagtgcgagctagccctgctcacgggcgtagaagccctagtccatatagaagag 181
Query: 638 agagggatggctctgatcttgttcgtgactccagccgcagtccttttcacaaagagcgag 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agagggatggctctgatcttgttcgtgactccagccgcagtccttttcacaaagagcgag 241
Query: 698 ggagaaccgatcggtcttcctcccttagtcccaaaagaagagggaggacaagccctcaaa 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggagaaccgatcggtcttcctcccttagtcccaaaagaagagggaggacaagccctcaaa 301
Query: 758 atggtggtgactctagccgtagtccttatgatcctgtgaaggctactagccctgaaaatg 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atggtggtgactctagccgtagtccttatgatcctgtgaaggctactagccctgaaaatg 361
Query: 818 gcgagatcaaacatagtcctgatgcaagagggaatcccagcgattacaatggatatggag 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcgagatcaaacatagtcctgatgcaagagggaatcccagcgattacaatggatatggag 421
Query: 878 gagggagcccagataatatgcgtgagcctgaacctgagcctgaggccgagcctgagccca 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagggagcccagataatatgcgtgagcctgaacctgagcctgaggccgagcctgagccca 481
Query: 938 gggacagtcccaactatggtggtcctgaaagtcccatgcatgaacgataccgcagccagt 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gggacagtcccaactatggtggtcctgaaagtcccatgcatgaacgataccgcagccagt 541
Query: 998 caccccctgcagaagaatga 1017
||||||||||||||||||||
Sbjct: 542 caccccctgcagaagaatga 561
>gnl|LJGI|TC72764 similar to UniRef100_Q6R4Q7 Cluster: Splicing factor-like protein;
n=1; Vitis riparia|Rep: Splicing factor-like protein -
Vitis riparia (Frost grape) (Vitis vulpina), partial
(41%)
Length = 846
Score = 973 bits (491), Expect = 0.0
Identities = 491/491 (100%)
Strand = Plus / Plus
Query: 1 atggaagatgagagagatgctgatgctgctattcgtgctcttgatcgggcagaatttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atggaagatgagagagatgctgatgctgctattcgtgctcttgatcgggcagaatttggt 415
Query: 61 cggaaggggcggagacttcgtgtggaatggacaaagcatgagcgtggcatcagaaagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cggaaggggcggagacttcgtgtggaatggacaaagcatgagcgtggcatcagaaagcct 475
Query: 121 gctgctccaagaagatcatcagctactgcgaggccatcaaagactttattcgtgattaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gctgctccaagaagatcatcagctactgcgaggccatcaaagactttattcgtgattaat 535
Query: 181 tttgatacattccatacaagaacaagggacttggagagacactttgaaccgtatgggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tttgatacattccatacaagaacaagggacttggagagacactttgaaccgtatgggaag 595
Query: 241 atagccagtgtgaggatcagaaggaattttgcttttgttcagtatgaatcagaggatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atagccagtgtgaggatcagaaggaattttgcttttgttcagtatgaatcagaggatgat 655
Query: 301 gcttgtaaagcactggaagccacaaataatagcaagttattggaccgggttatttctgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gcttgtaaagcactggaagccacaaataatagcaagttattggaccgggttatttctgtt 715
Query: 361 gaatttgctgctaaagatgatgatgataggagaaatggatatagcccagagagaggccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gaatttgctgctaaagatgatgatgataggagaaatggatatagcccagagagaggccat 775
Query: 421 gataatcgtcatgataggagccgtgatggaaggcgatcacctagtccttatcgcagagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gataatcgtcatgataggagccgtgatggaaggcgatcacctagtccttatcgcagagaa 835
Query: 481 aggggtagtcc 491
|||||||||||
Sbjct: 836 aggggtagtcc 846
>gnl|LJGI|BW595142 weakly similar to UniRef100_A7PY01 Cluster: Chromosome chr15
scaffold_37, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_37, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (15%)
Length = 142
Score = 208 bits (105), Expect = 5e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 93 aaagcatgagcgtggcatcagaaagcctgctgctccaagaagatcatcagctactgcgag 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aaagcatgagcgtggcatcagaaagcctgctgctccaagaagatcatcagctactgcgag 65
Query: 153 gccatcaaagactttattcgtgattaattttgatacattccatac 197
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gccatcaaagactttattcgtgattaattttgatacattccatac 110
>gnl|LJGI|TC61003 similar to UniRef100_A7PY01 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (95%)
Length = 1115
Score = 91.7 bits (46), Expect = 8e-18
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 193 catacaagaacaagggacttggagagacactttgaaccgtatgggaagatagccagtgtg 252
||||| || |||||||| |||||||||||||||| || |||||||| ||| | | | |
Sbjct: 481 cataccaggacaagggatctggagagacactttgatccctatgggaaaatatcaaatata 540
Query: 253 aggatcagaaggaattttgcttttgttcagtatgaatc 290
|||||||||||||||||||||||| |||||||||||||
Sbjct: 541 aggatcagaaggaattttgcttttattcagtatgaatc 578
>gnl|LJGI|TC59976 similar to UniRef100_A7PY01 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (93%)
Length = 1278
Score = 85.7 bits (43), Expect = 5e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 212 tggagagacactttgaaccgtatgggaagatagccagtgtgaggatcagaaggaattttg 271
|||||||||||||||| || |||||||| ||| | | | | |||||||||||||||||||
Sbjct: 714 tggagagacactttgatccctatgggaaaatatcaaatataaggatcagaaggaattttg 773
Query: 272 cttttgttcagtatgaatc 290
||||| |||||||||||||
Sbjct: 774 cttttattcagtatgaatc 792