Miyakogusa Predicted Gene

Lj5g3v1988630.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1988630.1 CUFF.56420.1
         (987 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV778378 weakly similar to UniRef100_Q70GJ4 Cluster: Sc...   262   4e-69
gnl|LJGI|FS338746 weakly similar to UniRef100_A7QBK8 Cluster: Ch...    68   1e-10

>gnl|LJGI|AV778378 weakly similar to UniRef100_Q70GJ4 Cluster: Scab resistance
           protein; n=1; Pyrus communis|Rep: Scab resistance
           protein - Pyrus communis (Pear), partial (28%)
          Length = 555

 Score =  262 bits (132), Expect = 4e-69
 Identities = 198/220 (90%)
 Strand = Plus / Plus

                                                                       
Query: 97  tgtttcttctcgtgtgcaaattcaaacggtgtcactgtccctgcctgcatagtacgagag 156
           |||||||||| |||||||||||||| | |||||  ||||||| | ||||||| |||||||
Sbjct: 129 tgtttcttcttgtgtgcaaattcaagcagtgtcgttgtccctccttgcataggacgagag 188

                                                                       
Query: 157 aggcaagctcttcttgagttcaaagcttccattctagacaatccatcacaaaggctttcc 216
           |||||||||||||||||||||||||||||| ||| | | ||||||||| | |||||||||
Sbjct: 189 aggcaagctcttcttgagttcaaagcttcccttcaaaaaaatccatcaaacaggctttcc 248

                                                                       
Query: 217 tcatggaaaggtagcactaattgttgcgaatgggaaggcataggctgtgacaatgttact 276
           ||||||||||| |  |||||| |||||||||||||||||||||||||||||||| | || 
Sbjct: 249 tcatggaaaggcactactaatggttgcgaatgggaaggcataggctgtgacaatatcacc 308

                                                   
Query: 277 ggacatgttgtcaagcttgatctcaggaatccttgcttcc 316
           |||||||||||||||||||||||||| |||||||||||||
Sbjct: 309 ggacatgttgtcaagcttgatctcagcaatccttgcttcc 348



 Score = 69.9 bits (35), Expect = 3e-11
 Identities = 106/129 (82%), Gaps = 3/129 (2%)
 Strand = Plus / Plus

                                                                       
Query: 431 atgtgagtccatctctgttgcaattggaacacttgacttacttggacttgacaggaaatg 490
           |||||| ||||||| |  |||| |||||| ||||| |||| ||||||||||  |||||| 
Sbjct: 406 atgtgaatccatctttactgcagttggaatacttggcttatttggacttgagcggaaatc 465

                                                                       
Query: 491 atttcagtttcagtccaataccagactccattggtaattctatgggacgattgaggtatc 550
           |||||| ||  ||||||||||||  || ||||||   |||||||  ||| ||||||||||
Sbjct: 466 atttcaattcaagtccaataccaagcttcattgg---ttctatgcaacgtttgaggtatc 522

                    
Query: 551 tttctctca 559
           |||||||||
Sbjct: 523 tttctctca 531


>gnl|LJGI|FS338746 weakly similar to UniRef100_A7QBK8 Cluster: Chromosome chr1
           scaffold_75, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_75, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (6%)
          Length = 420

 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 272 ttactggacatgttgtcaagcttgatctcaggaatccttgct 313
           |||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 262 ttacaggacatgttgtcaagcttgacctcaggaatccttgct 303