Miyakogusa Predicted Gene
- Lj5g3v1972310.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1972310.1 tr|Q6IP64|Q6IP64_XENLA MGC78924 protein
OS=Xenopus laevis GN=polr3e PE=2 SV=1,26.03,7e-18,Sin_N,DNA-directed
RNA polymerase III subunit Rpc5; DNA-DIRECTED RNA POLYMERASES III 80
KDA POLYPEPT,CUFF.56373.1
(1974 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73962 weakly similar to UniRef100_A7PUY2 Cluster: Chr... 1279 0.0
gnl|LJGI|FS348855 similar to UniRef100_A7PUY2 Cluster: Chromosom... 844 0.0
>gnl|LJGI|TC73962 weakly similar to UniRef100_A7PUY2 Cluster: Chromosome chr4
scaffold_32, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr4 scaffold_32, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (19%)
Length = 732
Score = 1279 bits (645), Expect = 0.0
Identities = 651/653 (99%)
Strand = Plus / Plus
Query: 1 atggacatcgacggcttcgacgacgctccgacccgcgccccttctcgggtctctaagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 atggacatcgacggcttcgacgacgctccgacccgcgccccttctcgggtctctaagttc 139
Query: 61 gcgccaaaaacatccaaactcatcaaacccaaatcggaacctgcccccaaacctgaaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gcgccaaaaacatccaaactcatcaaacccaaatcggaacctgcccccaaacctgaaccc 199
Query: 121 gaaccagaacccgaaccatcctcgtccaaaccagagcctcctaatgtagaagacgacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaaccagaacccgaaccatcctcgtccaaaccagagcctcctaatgtagaagacgacccc 259
Query: 181 atggatgaagacaccgttgaagatcaaatcgtgcgcgaaatcgacgtcttcttcactcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atggatgaagacaccgttgaagatcaaatcgtgcgcgaaatcgacgtcttcttcactcct 319
Query: 241 tctctcgacgagaacactgagttgtatgttttgcagtatcctttgagaccttcatggcga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctctcgacgagaacactgagttgtatgttttgcagtatcctttgagaccttcatggcga 379
Query: 301 ccttacgagttcgaagaacgatgcaaagaggttaggttgaaacctatatcttcacgagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttacgagttcgaagaacgatgcaaagaggttaggttgaaacctatatcttcacgagtg 439
Query: 361 gagattgatttatccattgatttggattcgcaaaatattgatagagactttgctgacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagattgatttatccattgatttggattcgcaaaatattgatagagactttgctgacaaa 499
Query: 421 tacagcattaccaagcagactttacacactccatgggagccagctactgcaaatggatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tacagcattaccaagcagactttacacactccatgggagccagctactgcaaatggatgt 559
Query: 481 gttgtcgggcttcttacaggcgataagttacacctgcatcctattagtgccattgtgcag 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 gttgtcgggcttcttacaggcgataagttacaactgcatcctattagtgccattgtgcag 619
Query: 541 ctccgaccatcactaaaacatcttaatcctggtggttcggagaggacgaacattatctcc 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 ctccgaccatcactaaaacatcttaatcctggtggttcggagaggaagaacattatctcc 679
Query: 601 accactgtcaaaattgaggggccaagtgaggaaaagtctgctgccacatcaaa 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 accactgtcaaaattgaggggccaagtgaggaaaagtctgctgccacatcaaa 732
>gnl|LJGI|FS348855 similar to UniRef100_A7PUY2 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 726
Score = 844 bits (426), Expect = 0.0
Identities = 432/434 (99%)
Strand = Plus / Minus
Query: 1541 caattgccctcaaaaagctttttcagactcaccaagtttgcagcttccaattcatacgtg 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caattgccctcaaaaagctttttcagactcaccaagtttgcagcttccaattcatacgtg 667
Query: 1601 aagaattgcgaaaaatggcagtttccaaaactacgctctcaaagggtgattctaaaattg 1660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagaattgcgaaaaatggcggtttccaaaactacgctctcaaagggtgattctaaaattg 607
Query: 1661 ccgtggatgcagctcatagtcttgatggtccagaacatgagctgaaggctgtcattagtg 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccgtggatgcagctcatagtcttgatggtccagaacatgagctgaaggctgtcattagtg 547
Query: 1721 atgttgcatgtgatatccatggttattatgtgttaaaatcatcacaagatgatccattca 1780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atgttgcaggtgatatccatggttattatgtgttaaaatcatcacaagatgatccattca 487
Query: 1781 gagatgtagtaatcgacctgcttcgaggaagtggacccaatgccaagctgaagaaggcag 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagatgtagtaatcgacctgcttcgaggaagtggacccaatgccaagctgaagaaggcag 427
Query: 1841 agatacttgaagctgctaggttaaaactcagaagggaggtccctaacaatgaatttacca 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agatacttgaagctgctaggttaaaactcagaagggaggtccctaacaatgaatttacca 367
Query: 1901 aggttatgaaagagttatgtgtctcgaaaggttctgtttgggtcttgaaaagcggtgatg 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggttatgaaagagttatgtgtctcgaaaggttctgtttgggtcttgaaaagcggtgatg 307
Query: 1961 gaagtatgtaatgg 1974
||||||||||||||
Sbjct: 306 gaagtatgtaatgg 293