Miyakogusa Predicted Gene
- Lj5g3v1959100.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1959100.2 Non Chatacterized Hit- tr|I1LDI2|I1LDI2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,88.59,0,RCC1,Regulator of chromosome condensation, RCC1;
BRX,Brevis radix-like domain; BRX_N,NULL; FYVE,Zinc,CUFF.56306.2
(3378 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72865 homologue to UniRef100_A7QMY3 Cluster: Chromoso... 1136 0.0
gnl|LJGI|BP053036 homologue to UniRef100_A7QMY2 Cluster: Chromos... 805 0.0
gnl|LJGI|TC70426 homologue to UniRef100_Q8W111 Cluster: At1g7695... 620 e-176
gnl|LJGI|FS324848 similar to UniRef100_A7QMY3 Cluster: Chromosom... 442 e-123
gnl|LJGI|TC67239 similar to UniRef100_Q8W111 Cluster: At1g76950/... 228 2e-58
gnl|LJGI|AV768708 weakly similar to UniRef100_Q5VY93 Cluster: Rh... 84 7e-15
gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome... 68 4e-10
>gnl|LJGI|TC72865 homologue to UniRef100_A7QMY3 Cluster: Chromosome undetermined
scaffold_129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_129, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(86%)
Length = 1058
Score = 1136 bits (573), Expect = 0.0
Identities = 573/573 (100%)
Strand = Plus / Plus
Query: 46 caggcattgattgctttgaaaaagggtgctcaactgcttaaatatggtcgtaagggaaag 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caggcattgattgctttgaaaaagggtgctcaactgcttaaatatggtcgtaagggaaag 545
Query: 106 cctaagttttgcccatttagactttccagtgatgaattgtctttaatctggatttcaagt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cctaagttttgcccatttagactttccagtgatgaattgtctttaatctggatttcaagt 605
Query: 166 agtggagaaaaaagtctgaagctatcttcgatctcaagaattattcctggacaaagaact 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agtggagaaaaaagtctgaagctatcttcgatctcaagaattattcctggacaaagaact 665
Query: 226 gctgttttccaacgatatctgcgtcctgagaaggactatttgtccttttcacttatttat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gctgttttccaacgatatctgcgtcctgagaaggactatttgtccttttcacttatttat 725
Query: 286 aaccacgggaagcgatcccttgatttgatttgcaaggataaggttcaggcagaattgtgg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aaccacgggaagcgatcccttgatttgatttgcaaggataaggttcaggcagaattgtgg 785
Query: 346 attactggtctcaaggcactgatttcttctggtcaaggtgggcgttccaaaatagatgga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 attactggtctcaaggcactgatttcttctggtcaaggtgggcgttccaaaatagatgga 845
Query: 406 tggagtgatggaggcctatgtcttgatgatagtaaagacttgacatcgagtagtcctagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tggagtgatggaggcctatgtcttgatgatagtaaagacttgacatcgagtagtcctagt 905
Query: 466 gaaagttcggttagtgcttcacatacacaggacaccagttctcctgatatttctgttagt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaaagttcggttagtgcttcacatacacaggacaccagttctcctgatatttctgttagt 965
Query: 526 gtgccgaatacttctccaaagtcatttcaacctgagaataccttaaatattgagaggtca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 gtgccgaatacttctccaaagtcatttcaacctgagaataccttaaatattgagaggtca 1025
Query: 586 catgcaccatcaaacccgtcaaatatgcaagtg 618
|||||||||||||||||||||||||||||||||
Sbjct: 1026 catgcaccatcaaacccgtcaaatatgcaagtg 1058
>gnl|LJGI|BP053036 homologue to UniRef100_A7QMY2 Cluster: Chromosome undetermined
scaffold_129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_129, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(15%)
Length = 456
Score = 805 bits (406), Expect = 0.0
Identities = 444/450 (98%), Gaps = 5/450 (1%)
Strand = Plus / Plus
Query: 989 tggcttctacaactgttgactttgttgcctgtggggagttccatacatgtgctgttacaa 1048
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcttctaca-ctgttgactttgttgcctgtggggagttccatacatgtgctgttacaa 59
Query: 1049 tggctggggaactctttacatggggtgatggtactcataaagctggacttcttggtcatg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tggctggggaactctttacatggggtgatggtactcataaagctggacttcttggtcatg 119
Query: 1109 gaactgatgttagtcattggataccaaagagaattgctggtccattagaggggcttcaag 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gaactgatgttagtcattggataccaaagagaattgctggtccattagaggggcttcaag 179
Query: 1169 ttgctttagtcacttgtggtccat-ggcacac-agctttgataacttcaaccgggcagct 1226
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 180 ttgctttagtcacttgtggtccatgggcacacaagctttgataacttcaaccgggcagct 239
Query: 1227 cttcacattcggtgatggaacatttggtgtcctaggccacggagatagggaaaatgtttc 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 240 cttcacattcggtgatggaacatttggtgtcctaggccacggagatagggaaaatgtctc 299
Query: 1287 atatcctagagaagtagaatccttgtctggtttgaggacaatagctgttgcatgtggagt 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atatcctagagaagtagaatccttgtctggtttgaggacaatagctgttgcatgtggagt 359
Query: 1347 gtggcatactgcagctgtagtagaagttattgtgacacaatccagtgcaagtgtatcgtc 1406
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtggcatactgcagctgtagta-aagttattgtgacacaatccagtgcaagtgtatcgtc 418
Query: 1407 aggtaaattatttac-ttggggtgatgggg 1435
||||||||||||||| ||||||||||||||
Sbjct: 419 aggtaaattatttactttggggtgatgggg 448
>gnl|LJGI|TC70426 homologue to UniRef100_Q8W111 Cluster: At1g76950/F22K20_5; n=1;
Arabidopsis thaliana|Rep: At1g76950/F22K20_5 -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 727
Score = 620 bits (313), Expect = e-176
Identities = 313/313 (100%)
Strand = Plus / Plus
Query: 3066 gaatttccaagatgacgagagtggttcaagatcaaggaatgctgtatcgcctgctgctag 3125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaatttccaagatgacgagagtggttcaagatcaaggaatgctgtatcgcctgctgctag 60
Query: 3126 taatcatgttgaggcagaatggattgaacagtatgagcccggcgtctatataacactggt 3185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taatcatgttgaggcagaatggattgaacagtatgagcccggcgtctatataacactggt 120
Query: 3186 tgccctgcgtgatggaactcgagatctaaagcgagtgcgcttcagccggagaagatttgg 3245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgccctgcgtgatggaactcgagatctaaagcgagtgcgcttcagccggagaagatttgg 180
Query: 3246 cgagcaccaagcagagacttggtggtcagagaaccgcgaaaaggtatacgaaaagtacaa 3305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgagcaccaagcagagacttggtggtcagagaaccgcgaaaaggtatacgaaaagtacaa 240
Query: 3306 tgttcgaagcacagacaagtctacgggccaagcatcacgcaggggagagggtgctggttc 3365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgttcgaagcacagacaagtctacgggccaagcatcacgcaggggagagggtgctggttc 300
Query: 3366 acctgttctataa 3378
|||||||||||||
Sbjct: 301 acctgttctataa 313
>gnl|LJGI|FS324848 similar to UniRef100_A7QMY3 Cluster: Chromosome undetermined
scaffold_129, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_129,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (96%)
Length = 737
Score = 442 bits (223), Expect = e-123
Identities = 421/487 (86%)
Strand = Plus / Plus
Query: 1 atggcagatcttgttagccacaggaatgccgaccgtgacatcgaccaggcattgattgct 60
||||||||||||| ||| || |||||||| |||||||||| | || ||| | |||||
Sbjct: 131 atggcagatcttgctagatacgggaatgccaaccgtgacattcaacaagcactaattgcc 190
Query: 61 ttgaaaaagggtgctcaactgcttaaatatggtcgtaagggaaagcctaagttttgccca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 191 ttgaaaaagggtgctcaactgcttaaatatggtcgtaagggaaagcccaagttttgccca 250
Query: 121 tttagactttccagtgatgaattgtctttaatctggatttcaagtagtggagaaaaaagt 180
||||||||||||| ||||| || |||||||||||||||||||||||||||||| || |
Sbjct: 251 tttagactttccaatgatggatcaactttaatctggatttcaagtagtggagaaagaaat 310
Query: 181 ctgaagctatcttcgatctcaagaattattcctggacaaagaactgctgttttccaacga 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 311 ctgaagctatcttctgtctcaagaattattcctggacaaagaactgctgttttcaaacgt 370
Query: 241 tatctgcgtcctgagaaggactatttgtccttttcacttatttataaccacgggaagcga 300
|| |||||||||| ||||| |||||||||||||||||||||||| | ||| |||| |
Sbjct: 371 tacttgcgtcctgaaaaggagtatttgtccttttcacttatttatgatagcggaaagcta 430
Query: 301 tcccttgatttgatttgcaaggataaggttcaggcagaattgtggattactggtctcaag 360
|||||||| |||||||||| ||||| ||| |||||||| ||||||| ||||||||||
Sbjct: 431 tcccttgacctgatttgcaaagataaagttgaggcagaagcgtggatttctggtctcaaa 490
Query: 361 gcactgatttcttctggtcaaggtgggcgttccaaaatagatggatggagtgatggaggc 420
||||||| |||||||| |||||||| || |||||||| |||||||||||||||| |||
Sbjct: 491 tcactgatctcttctggccaaggtggtcggtccaaaattgatggatggagtgatgagggc 550
Query: 421 ctatgtcttgatgatagtaaagacttgacatcgagtagtcctagtgaaagttcggttagt 480
|| |||||||||||| | ||| || ||||| | |||||| || || ||||| | ||||
Sbjct: 551 ctcaatcttgatgatagcagagatttaacatcaaatagtccaagcgacagttcagctagt 610
Query: 481 gcttcac 487
|| ||||
Sbjct: 611 gcgtcac 617
>gnl|LJGI|TC67239 similar to UniRef100_Q8W111 Cluster: At1g76950/F22K20_5; n=1;
Arabidopsis thaliana|Rep: At1g76950/F22K20_5 -
Arabidopsis thaliana (Mouse-ear cress), partial (6%)
Length = 671
Score = 228 bits (115), Expect = 2e-58
Identities = 259/307 (84%)
Strand = Plus / Plus
Query: 3066 gaatttccaagatgacgagagtggttcaagatcaaggaatgctgtatcgcctgctgctag 3125
||||||||||||||| ||||||||| | ||||| ||||||||| | ||||| |||
Sbjct: 1 gaatttccaagatgatgagagtggtctgaaatcaaagaatgctgtgctggctgctaatag 60
Query: 3126 taatcatgttgaggcagaatggattgaacagtatgagcccggcgtctatataacactggt 3185
||||||| |||||||||| ||||||||||||||||| || || ||||||||||| || ||
Sbjct: 61 taatcatattgaggcagagtggattgaacagtatgaacctggtgtctatataacccttgt 120
Query: 3186 tgccctgcgtgatggaactcgagatctaaagcgagtgcgcttcagccggagaagatttgg 3245
|||||||||||||||||| ||||||| |||||||| || ||||||||||| | ||| ||
Sbjct: 121 ggccctgcgtgatggaactagagatctgaagcgagtacgattcagccggaggaaattcgg 180
Query: 3246 cgagcaccaagcagagacttggtggtcagagaaccgcgaaaaggtatacgaaaagtacaa 3305
||| |||||||||||| |||||||||||||||||| || |||||||| ||||| |||||
Sbjct: 181 agagaaccaagcagagatttggtggtcagagaaccgggagaaggtatatgaaaaatacaa 240
Query: 3306 tgttcgaagcacagacaagtctacgggccaagcatcacgcaggggagagggtgctggttc 3365
|||||| || ||||||||| | |||||||| ||| |||| |||||| ||||||||
Sbjct: 241 tgttcgtagtggggacaagtcttccagccaagcagcacttagggaagagggcgctggttc 300
Query: 3366 acctgtt 3372
||||||
Sbjct: 301 tcctgtt 307
>gnl|LJGI|AV768708 weakly similar to UniRef100_Q5VY93 Cluster: Rho/rac guanine
nucleotide exchange factor (GEF) 2; n=1; Homo
sapiens|Rep: Rho/rac guanine nucleotide exchange factor
(GEF) 2 - Homo sapiens (Human), partial (3%)
Length = 473
Score = 83.8 bits (42), Expect = 7e-15
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 1 atggcagatcttgttagccacaggaatgccgaccgtgacatc 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atggcagatcttgttagccacaggaatgccgaccgtgacatc 473
>gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 1246
Score = 67.9 bits (34), Expect = 4e-10
Identities = 136/170 (80%)
Strand = Plus / Plus
Query: 1722 tgaagtttatacttggggaaagggtgcaaatgggagattaggtcatggagacgttgaaga 1781
||||||||| |||||||| |||||||||||||| | ||||| |||||||| ||| ||
Sbjct: 253 tgaagtttacacttggggtaagggtgcaaatggtcgtttaggccatggagatactgatga 312
Query: 1782 tagaaaagcacccactttggttgaagccttgaaagatagacatgtgaaatatattgcatg 1841
|| ||| | || || || || ||||| |||||||| | ||| || ||| |||||| ||
Sbjct: 313 taaaaactccccaacattagtagaagcattgaaagacaaacaagtcaaaagtattgcttg 372
Query: 1842 tggttcaaactactctgctgccatatgccttcataagtgggtttctggtg 1891
|||| |||| | | | || ||||||||||| ||||||||||| |||||||
Sbjct: 373 tggtacaaatttcaccgcagccatatgcctgcataagtgggtatctggtg 422