Miyakogusa Predicted Gene
- Lj5g3v1959090.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1959090.1 Non Chatacterized Hit- tr|I1NH10|I1NH10_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13293 PE,82.61,0,RRM,RNA
recognition motif domain; SMALL NUCLEAR RIBONUCLEOPROTEIN,NULL; U1
SMALL NUCLEAR RIBONUCLEOP,CUFF.56278.1
(759 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73260 similar to UniRef100_Q8H0P8 Cluster: RNA-bindin... 1497 0.0
gnl|LJGI|TC60605 similar to UniRef100_Q8H0P8 Cluster: RNA-bindin... 480 e-135
gnl|LJGI|AV410204 weakly similar to UniRef100_Q8H0P8 Cluster: RN... 278 5e-74
gnl|LJGI|AV769796 similar to UniRef100_Q8H0P8 Cluster: RNA-bindi... 210 9e-54
gnl|LJGI|AU088876 similar to UniRef100_Q8H0P8 Cluster: RNA-bindi... 58 8e-08
>gnl|LJGI|TC73260 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (62%)
Length = 1115
Score = 1497 bits (755), Expect = 0.0
Identities = 758/759 (99%)
Strand = Plus / Plus
Query: 1 atgacggacggctactggaatcggcagcaggcgatgtacccctctgccggcggcatactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atgacggacggctactggaatcggcagcaggcgatgtacccctctgccggcggcatactc 179
Query: 61 aaacgaccgcgtactgaatacgatatgtcaccttcgggtcttacttcagctaatgacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaacgaccgcgtactgaatacgatatgtcaccttcgggtcttacttcagctaatgacatg 239
Query: 121 cataattttatttcacgagataatgaccgtactggtcaccaggggataaaggacacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cataattttatttcacgagataatgaccgtactggtcaccaggggataaaggacacaaaa 299
Query: 181 actcttgggtctgcttatgaccgctaccttcagagtgcggggcttacttcatttaattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 actcttgggtctgcttatgaccgctaccttcagagtgcggggcttacttcatttaattct 359
Query: 241 ggggaagccagcacaattggtggtgttggattgggaaggggtgttggtgggttgccaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggggaagccagcacaattggtggtgttggattgggaaggggtgttggtgggttgccaggc 419
Query: 301 cattcactaggtgatcctgcggtcatggggcatctgggtggtggtggccatgatcttgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cattcactaggtgatcctgcggtcatggggcatctgggtggtggtggccatgatcttgca 479
Query: 361 cgaaatggacggaatgccaattacggcggtcagttaccagtagatgcagtttccaggcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cgaaatggacggaatgccaattacggcggtcagttaccagtagatgcagtttccaggcct 539
Query: 421 ggacctgaaacagttcctctacctccagatgcttcgagtactttatatgttgaaggtctt 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 540 ggacctgaaacagttcctctacctccagatgcttagagtactttatatgttgaaggtctt 599
Query: 481 ccatcggactgcacaaaaagggaagtggcccatatttttcgcccttttgttggatataga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccatcggactgcacaaaaagggaagtggcccatatttttcgcccttttgttggatataga 659
Query: 541 gaagtgagacttgtgaccaaagaatccaaacatcgaggtggagatcctttaatcctttgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaagtgagacttgtgaccaaagaatccaaacatcgaggtggagatcctttaatcctttgt 719
Query: 601 tttgtagattttgctaatccggcttgtgcagcaactgctttgagtgccttacaaggttat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tttgtagattttgctaatccggcttgtgcagcaactgctttgagtgccttacaaggttat 779
Query: 661 aaagttgatgaactcagtcctgagtctagtcacttgcggcttcagttttctcggtttccc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aaagttgatgaactcagtcctgagtctagtcacttgcggcttcagttttctcggtttccc 839
Query: 721 ggtcccagaagtggagctggacctcgtggcaagaggtga 759
|||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ggtcccagaagtggagctggacctcgtggcaagaggtga 878
>gnl|LJGI|TC60605 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (76%)
Length = 1190
Score = 480 bits (242), Expect = e-135
Identities = 587/702 (83%)
Strand = Plus / Plus
Query: 58 ctcaaacgaccgcgtactgaatacgatatgtcaccttcgggtcttacttcagctaatgac 117
||||||||||| ||| | || ||||||||| || |||| ||| | |||| | ||||||
Sbjct: 173 ctcaaacgaccccgttccgactacgatatgccagcttctggtttgtcttcgggtaatgat 232
Query: 118 atgcataattttatttcacgagataatgaccgtactggtcaccaggggataaaggacaca 177
|| |||||| |||| || ||| ||||||||||||||| || | ||| |||||||
Sbjct: 233 attaataattatattgtgcgcgatgatgaccgtactggtccccgaatgctaagggacaca 292
Query: 178 aaaactcttgggtctgcttatgaccgctaccttcagagtgcggggcttacttcatttaat 237
||||| |||| |||||||||||||||||||||||||||| | ||| || ||| || |
Sbjct: 293 aaaacaattggatctgcttatgaccgctaccttcagagtgggcaactttctgcatatact 352
Query: 238 tctggggaagccagcacaattggtggtgttggattgggaaggggtgttggtgggttgcca 297
|||||||||||||| ||||| |||||| |||||| | ||||||| |||||| || |||
Sbjct: 353 tctggggaagccagtacaatcggtggtcttggatatgcaaggggtcctggtggattacca 412
Query: 298 ggccattcactaggtgatcctgcggtcatggggcatctgggtggtggtggccatgatctt 357
|| ||||| |||| ||||| ||| | |||||||| || || |||||||| | |||| ||
Sbjct: 413 ggacattctctagctgatcatgctgccatggggcgtcatggaggtggtggtcctgatatt 472
Query: 358 gcacgaaatggacggaatgccaattacggcggtcagttaccagtagatgcagtttccagg 417
|||| ||||||||| | ||||| || |||||| |||||||||| | |||||||||
Sbjct: 473 gcaccaaatggacgaggttttaattatggtggtcagccaccagtagattctgtttccagg 532
Query: 418 cctggacctgaaacagttcctctacctccagatgcttcgagtactttatatgttgaaggt 477
||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 533 cctggacatgagacagttcctctacctccagatgcttcaagtactttatatgttgaaggt 592
Query: 478 cttccatcggactgcacaaaaagggaagtggcccatatttttcgcccttttgttggatat 537
|| || || || |||| ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 593 ctgccttctgatagcaccaaaagagaagtggctcatattttccgcccttttgttggatat 652
Query: 538 agagaagtgagacttgtgaccaaagaatccaaacatcgaggtggagatcctttaatcctt 597
||||||||||||||||| || ||||||||||||||||| |||||||||||| | ||||||
Sbjct: 653 agagaagtgagacttgtaactaaagaatccaaacatcgtggtggagatcctctgatcctt 712
Query: 598 tgttttgtagattttgctaatccggcttgtgcagcaactgctttgagtgccttacaaggt 657
||||| || || |||| ||||| |||||||| ||||||||| | |||||||| ||||||
Sbjct: 713 tgtttcgtggactttgaaaatccagcttgtgccgcaactgctcttagtgccttgcaaggt 772
Query: 658 tataaagttgatgaactcagtcctgagtctagtcacttgcggcttcagttttctcggttt 717
|||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||| |
Sbjct: 773 tataaagttgatgaactcgatcctgagtctggtcacttgaggcttcagttttcccggtat 832
Query: 718 cccggtcccagaagtggagctggacctcgtggcaagaggtga 759
|| ||||| |||||||| ||||| |||||| |||||||||
Sbjct: 833 cctggtcctagaagtgggcctggatttcgtggtaagaggtga 874
>gnl|LJGI|AV410204 weakly similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein;
n=1; Medicago truncatula|Rep: RNA-binding protein -
Medicago truncatula (Barrel medic), partial (26%)
Length = 333
Score = 278 bits (140), Expect = 5e-74
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 222 gcttacttcatttaattctggggaagccagcacaattggtggtgttggattgggaagggg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcttacttcatttaattctggggaagccagcacaattggtggtgttggattgggaagggg 253
Query: 282 tgttggtgggttgccaggccattcactaggtgatcctgcggtcatggggcatctgggtgg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgttggtgggttgccaggccattcactaggtgatcctgcggtcatggggcatctgggtgg 313
Query: 342 tggtggccatgatcttgcac 361
||||||||||||||||||||
Sbjct: 314 tggtggccatgatcttgcac 333
Score = 210 bits (106), Expect = 9e-54
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 117 catgcataattttatttcacgagataatgaccgtactggtcaccaggggataaaggacac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catgcataattttatttcacgagataatgaccgtactggtcaccaggggataaaggacac 60
Query: 177 aaaaactcttgggtctgcttatgaccgctaccttcagagtgcgggg 222
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaactcttgggtctgcttatgaccgctaccttcagagtgcgggg 106
>gnl|LJGI|AV769796 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (12%)
Length = 582
Score = 210 bits (106), Expect = 9e-54
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 654 aggttataaagttgatgaactcagtcctgagtctagtcacttgcggcttcagttttctcg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aggttataaagttgatgaactcagtcctgagtctagtcacttgcggcttcagttttctcg 290
Query: 714 gtttcccggtcccagaagtggagctggacctcgtggcaagaggtga 759
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtttcccggtcccagaagtggagctggacctcgtggcaagaggtga 244
>gnl|LJGI|AU088876 similar to UniRef100_Q8H0P8 Cluster: RNA-binding protein; n=1;
Medicago truncatula|Rep: RNA-binding protein - Medicago
truncatula (Barrel medic), partial (23%)
Length = 406
Score = 58.0 bits (29), Expect = 8e-08
Identities = 123/155 (79%)
Strand = Plus / Plus
Query: 58 ctcaaacgaccgcgtactgaatacgatatgtcaccttcgggtcttacttcagctaatgac 117
||||||||||| ||| | || ||||||||| || |||| ||| | |||| | ||||||
Sbjct: 136 ctcaaacgaccccgttccgactacgatatgccagcttctggtttgtcttcgggtaatgat 195
Query: 118 atgcataattttatttcacgagataatgaccgtactggtcaccaggggataaaggacaca 177
|| |||||| |||| || ||| ||||||||||||||| || | ||| |||| ||
Sbjct: 196 attaataattatattgtgcgcgatgatgaccgtactggtccccgaatgctaanggacnca 255
Query: 178 aaaactcttgggtctgcttatgaccgctaccttca 212
||||| |||| |||||||||||||||||||||||
Sbjct: 256 aaaacaattggatctgcttatgaccgctaccttca 290