Miyakogusa Predicted Gene
- Lj5g3v1957010.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1957010.2 tr|B9MUH7|B9MUH7_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_917210
PE=4,76.37,0,ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE
PROTEIN-RELATED,RFT1; Rft-1,RFT1,CUFF.56271.2
(1563 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77262 weakly similar to UniRef100_A7Q7R7 Cluster: Chr... 523 e-147
gnl|LJGI|BP067046 weakly similar to UniRef100_A7Q5B5 Cluster: Ch... 500 e-140
gnl|LJGI|BP045892 similar to UniRef100_A7Q5B6 Cluster: Chromosom... 486 e-136
gnl|LJGI|TC80769 similar to UniRef100_A7Q7R7 Cluster: Chromosome... 178 7e-44
>gnl|LJGI|TC77262 weakly similar to UniRef100_A7Q7R7 Cluster: Chromosome chr18
scaffold_61, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_61, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (21%)
Length = 549
Score = 523 bits (264), Expect = e-147
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1300 ttcataaagaattacttcaagggatcttcttccttttctttctgtgactgcttgccttca 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcataaagaattacttcaagggatcttcttccttttctttctgtgactgcttgccttca 60
Query: 1360 ggatggattattctgttactttcaggtgtaatcactctcatctctgagaatgtatttctg 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatggattattctgttactttcaggtgtaatcactctcatctctgagaatgtatttctg 120
Query: 1420 gaccaagataatttctggccatcatttatgatccatttctccgttgggctggcttgcttc 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaccaagataatttctggccatcatttatgatccatttctccgttgggctggcttgcttc 180
Query: 1480 tgtgtgtcagcatatgtgatctattgtcgggaaaaacctttcatcaaaagaattactcgc 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtgtgtcagcatatgtgatctattgtcgggaaaaacctttcatcaaaagaattactcgc 240
Query: 1540 tttcgtgatcactcggactgaaga 1563
||||||||||||||||||||||||
Sbjct: 241 tttcgtgatcactcggactgaaga 264
>gnl|LJGI|BP067046 weakly similar to UniRef100_A7Q5B5 Cluster: Chromosome undetermined
scaffold_52, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_52, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(51%)
Length = 556
Score = 500 bits (252), Expect = e-140
Identities = 264/268 (98%)
Strand = Plus / Minus
Query: 1296 aatattcataaagaattacttcaagggatcttcttccttttctttctgtgactgcttgcc 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aatattcataaagaattacttcaagggatcttcttccttttctttctgtgactgcttgcc 497
Query: 1356 ttcaggatggattattctgttactttcaggtgtaatcactctcatctctgagaatgtatt 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttcaggatggattattctgttactttcaggtgtaatcactctcatctctgagaatgtatt 437
Query: 1416 tctggaccaagataatttctggccatcatttatgatccatttctccgttgggctggcttg 1475
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 436 tctggaccaagataatttctggccatcatttatgatccatttctccattgggctggcttg 377
Query: 1476 cttctgtgtgtcagcatatgtgatctattgtcgggaaaaacctttcatcaaaagaattac 1535
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 376 cttctgtgtgtcatcatatgtgatctattgtcgggaaaagcctttcatcaaaagaattat 317
Query: 1536 tcgctttcgtgatcactcggactgaaga 1563
||||||||||||||||||||||||||||
Sbjct: 316 tcgctttcgtgatcactcggactgaaga 289
>gnl|LJGI|BP045892 similar to UniRef100_A7Q5B6 Cluster: Chromosome undetermined
scaffold_52, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_52, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (17%)
Length = 405
Score = 486 bits (245), Expect = e-136
Identities = 245/245 (100%)
Strand = Plus / Plus
Query: 1 atgtcgaaggatacagaccctgctaatctatcgcgcaccttcaagtacctattagctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 atgtcgaaggatacagaccctgctaatctatcgcgcaccttcaagtacctattagctact 220
Query: 61 cagttcttgtcaaggggaattccatttatattcaatacatggattgtcaggcatcttaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 cagttcttgtcaaggggaattccatttatattcaatacatggattgtcaggcatcttaca 280
Query: 121 caggaggactatgcgctctatgcggtgcaatttcatctgtttgtcacatgtgtcttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caggaggactatgcgctctatgcggtgcaatttcatctgtttgtcacatgtgtcttattt 340
Query: 181 cttagccgggagggcttccgaagagcatgtatgcggatggacataagacgtgatggcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttagccgggagggcttccgaagagcatgtatgcggatggacataagacgtgatggcact 400
Query: 241 tcaat 245
|||||
Sbjct: 401 tcaat 405
>gnl|LJGI|TC80769 similar to UniRef100_A7Q7R7 Cluster: Chromosome chr18 scaffold_61,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_61, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 387
Score = 178 bits (90), Expect = 7e-44
Identities = 102/106 (96%)
Strand = Plus / Plus
Query: 1451 tccatttctccgttgggctggcttgcttctgtgtgtcagcatatgtgatctattgtcggg 1510
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tccatttctccattgggctggcttgcttctgtgtgtcatcatatgtgatctattgtcggg 60
Query: 1511 aaaaacctttcatcaaaagaattactcgctttcgtgatcactcgga 1556
|||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 aaaagcctttcatcaaaagaattattcgctttcgtgatcactcgga 106