Miyakogusa Predicted Gene
- Lj5g3v1950880.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1950880.1 Non Chatacterized Hit- tr|B8LM63|B8LM63_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,51.55,3e-18,FAMILY NOT NAMED,NULL; Myb_DNA-bind_4,NULL; seg,NULL;
coiled-coil,NULL,CUFF.56227.1
(1350 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68420 similar to UniRef100_A7Q7C1 Cluster: Chromosome... 258 8e-68
gnl|LJGI|FS321122 similar to UniRef100_A7Q7C1 Cluster: Chromosom... 145 8e-34
gnl|LJGI|AW719333 homologue to UniRef100_A7Q7C1 Cluster: Chromos... 135 8e-31
gnl|LJGI|DC594514 127 2e-28
gnl|LJGI|TC71819 similar to UniRef100_A7PPN0 Cluster: Chromosome... 70 4e-11
>gnl|LJGI|TC68420 similar to UniRef100_A7Q7C1 Cluster: Chromosome chr18 scaffold_59,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_59, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 991
Score = 258 bits (130), Expect = 8e-68
Identities = 253/294 (86%)
Strand = Plus / Plus
Query: 1057 catggacaggtggtccattctgatgttaatcaagttttacctgaaggcatgagagcagct 1116
||||||| | ||||||| | ||||| ||||||| |||||||||| |||||||||| |||
Sbjct: 448 catggaccgatggtccaatttgatgccaatcaagctttacctgaaagcatgagagcggct 507
Query: 1117 tggttacaaaagcaatgggttgaatctcgctcacttcagttagaagagcaaaaggtacag 1176
|||||||| ||||||||| |||||||||| ||||||||||||||||| || ||| |||||
Sbjct: 508 tggttacagaagcaatggattgaatctcggtcacttcagttagaagaacagaagctacag 567
Query: 1177 cttcaggttgagatgttggaactagagaaacagagactcaagtggcagaggtttagcaag 1236
|||||| ||||||| | |||||||||||||| ||| | ||||||||||||||||| |||
Sbjct: 568 attcaggctgagatgctagaactagagaaacaaagattgaagtggcagaggtttagtaag 627
Query: 1237 aaaaaggaccgcgagttggaaaagctgagtctagaaaatgaaagaatgaagcttgaaaat 1296
||||| ||||| |||||||| ||| ||| || || ||||||||||||||||| ||||||
Sbjct: 628 aaaaaagaccgggagttggagaagatgaagctggagaatgaaagaatgaagctagaaaat 687
Query: 1297 gaacgtattgctttagaactgaaacgaaaagaaatgggcgccggcttaaactag 1350
|||||||| ||||||||||| || || || ||||| ||| | ||||| ||||||
Sbjct: 688 gaacgtatcgctttagaactaaagcgtaaggaaattggcactggctttaactag 741
Score = 240 bits (121), Expect = 2e-62
Identities = 278/329 (84%), Gaps = 1/329 (0%)
Strand = Plus / Plus
Query: 613 tgtcaggttgttgagaatcctgcgcttttggatgtaatagagtttctttcggagaaagaa 672
|||||||||||||| |||| ||| || |||||| ||||||| | |||||| |||||||||
Sbjct: 32 tgtcaggttgttgaaaatc-tgctctgttggatttaatagattatctttctgagaaagaa 90
Query: 673 aaggacgatgttcgaaaaatattgagctcgaaacacttgttctatgaagagatgtgctct 732
||||| |||||||| |||||||| ||||| || || | || |||||||||||||| |||
Sbjct: 91 aaggatgatgttcggaaaatattaagctcaaagcagctcttttatgaagagatgtgttct 150
Query: 733 taccataatggtaatagattgcatttaccccatgatcctgcattgcaacgttctctgcag 792
||||| ||||||||||||||||||||||||||||||| |||||||||||| || || |||
Sbjct: 151 taccacaatggtaatagattgcatttaccccatgatcttgcattgcaacgatcgctacag 210
Query: 793 atagctctccgaaatagagatgaccatgataacgatgatatcagaaggttccatcatgat 852
||||||||||||||||||||||| || || |||||||||||||||| | || |||||
Sbjct: 211 ttagctctccgaaatagagatgacttcgaaaatgatgatatcagaaggtcctatgatgat 270
Query: 853 ggtcacgacgaagatgagcaagatgtggaaatggatgatcatgatgattttaaagagaat 912
| ||| || |||||||| |||||| | | || ||||||||||| || || ||||||||
Sbjct: 271 gatcatgatgaagatgaccaagatatcggaaccgatgatcatgacgaccttgaagagaat 330
Query: 913 tgttcctcccatggtgatagtagaggaat 941
| | | || ||||| || |||||||||||
Sbjct: 331 tatgcttctcatggagagagtagaggaat 359
>gnl|LJGI|FS321122 similar to UniRef100_A7Q7C1 Cluster: Chromosome chr18 scaffold_59,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_59, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 761
Score = 145 bits (73), Expect = 8e-34
Identities = 138/159 (86%), Gaps = 3/159 (1%)
Strand = Plus / Plus
Query: 252 caaaaactcgacgagtgaggaagatgagccgagctttaatgaggatggtgttgatggtca 311
||||||||| | |||||||||||||||||||||| | |||||| ||||| ||||||||
Sbjct: 599 caaaaactcagcaagtgaggaagatgagccgagctatgctgaggaaggtgtcgatggtca 658
Query: 312 ccat---gaaggggttagaggtaaaaagggatcgccttggcagcgggtgaagtggactga 368
||| |||| | |||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 659 tcatcatgaagcgagtagagggaaaaaggggtcgccttggcagcgggtgaagtggactga 718
Query: 369 taagatggtaaggctcctgataacggctgtttcttatat 407
||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 719 taagatggtgaggcttctgataacagctgtgtcttatat 757
Score = 65.9 bits (33), Expect = 6e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 1 atggaagggaatttgtcacaggggggaataattcaaggtgggagttcttttggtggtttt 60
||||||||||| |||||||||| || || |||||||||| ||||||||||||||||
Sbjct: 348 atggaagggaagatgtcacagggaggtgtagctcaaggtggggcttcttttggtggtttt 407
Query: 61 gatttgccaggatcaat 77
|||||||| ||| ||||
Sbjct: 408 gatttgcctggagcaat 424
>gnl|LJGI|AW719333 homologue to UniRef100_A7Q7C1 Cluster: Chromosome chr18 scaffold_59,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_59, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 397
Score = 135 bits (68), Expect = 8e-31
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 1283 tgaagcttgaaaatgaacgtattgctttagaactgaaacgaaaagaaatgggcgccggct 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgaagcttgaaaatgaacgtattgctttagaactgaaacgaaaagaaatgggcgccggct 338
Query: 1343 taaactag 1350
||||||||
Sbjct: 337 taaactag 330
>gnl|LJGI|DC594514
Length = 563
Score = 127 bits (64), Expect = 2e-28
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 atggaagggaatttgtcacaggggggaataattcaaggtgggagttcttttggtggtttt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 496 atggaagggaatttgtcacaggggggaataattcaaggtgggagttctattggtggtttt 555
Query: 61 gatttgcc 68
||||||||
Sbjct: 556 gatttgcc 563
>gnl|LJGI|TC71819 similar to UniRef100_A7PPN0 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 1063
Score = 69.9 bits (35), Expect = 4e-11
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 525 tgtttcacctcagcaatgtgaggataagttcaatgatcttaataaaaggta 575
|||||| ||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 655 tgtttctcctcagcaatgtgaggacaagttcaatgatctgaacaaaaggta 705