Miyakogusa Predicted Gene
- Lj5g3v1889580.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1889580.1 Non Chatacterized Hit- tr|I1NH63|I1NH63_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50116
PE,81.55,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PABP-1234:
polyadenylate binding protein, human ty,,CUFF.56121.1
(1980 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS326828 similar to UniRef100_A7QRL0 Cluster: Chromosom... 1154 0.0
gnl|LJGI|TC71163 similar to UniRef100_A7QRL0 Cluster: Chromosome... 872 0.0
gnl|LJGI|AV775939 weakly similar to UniRef100_A7QRL0 Cluster: Ch... 535 e-151
gnl|LJGI|TC59135 similar to UniRef100_Q9M549 Cluster: Poly(A)-bi... 76 9e-13
gnl|LJGI|BW607266 similar to UniRef100_Q00M91 Cluster: Poly(A)-b... 70 6e-11
gnl|LJGI|TC59012 similar to UniRef100_Q00M91 Cluster: Poly(A)-bi... 60 6e-08
gnl|LJGI|TC77811 similar to UniRef100_Q9M549 Cluster: Poly(A)-bi... 56 9e-07
>gnl|LJGI|FS326828 similar to UniRef100_A7QRL0 Cluster: Chromosome undetermined
scaffold_151, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_151,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (24%)
Length = 748
Score = 1154 bits (582), Expect = 0.0
Identities = 582/582 (100%)
Strand = Plus / Plus
Query: 1 atggcggcggcggcgatgacgactccagcggtggtggctcagactgcaacagccccggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atggcggcggcggcgatgacgactccagcggtggtggctcagactgcaacagccccggtt 226
Query: 61 gctccggtgacggctccagcgccggcattggtcggaggagggccatttgcgaatgcgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gctccggtgacggctccagcgccggcattggtcggaggagggccatttgcgaatgcgtct 286
Query: 121 ctgtacgtaggcgatctcgaagggaacgtgaacgaggcgcagctgtatgatctgttcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctgtacgtaggcgatctcgaagggaacgtgaacgaggcgcagctgtatgatctgttcagc 346
Query: 181 cagttggctcagattgtctcgattagggtttgcagggatcagaccaagcgatcctctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cagttggctcagattgtctcgattagggtttgcagggatcagaccaagcgatcctctctc 406
Query: 241 ggttacgcttatgtcaactttgctaacgctcaggatgcggctaatgcattggaacttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ggttacgcttatgtcaactttgctaacgctcaggatgcggctaatgcattggaacttctg 466
Query: 301 aacttcactcctgtgaatgggaagcctattcggattatgttttctcagcgtgatccgagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aacttcactcctgtgaatgggaagcctattcggattatgttttctcagcgtgatccgagc 526
Query: 361 atccggaaaagtggatatgccaatgtgtttatcaagaacctggacacatcaattgataac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atccggaaaagtggatatgccaatgtgtttatcaagaacctggacacatcaattgataac 586
Query: 421 aaggcattgcatgacacttttgctgcctttggccctgtgctttcttgtaaggtggctgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaggcattgcatgacacttttgctgcctttggccctgtgctttcttgtaaggtggctgtt 646
Query: 481 gatgcatctggtcagtcgaaagggtatggttttgtgcagtttgacaatgatgaggctgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gatgcatctggtcagtcgaaagggtatggttttgtgcagtttgacaatgatgaggctgcc 706
Query: 541 cagaatgccattaacaagttgaatggcatgctgattaatgat 582
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cagaatgccattaacaagttgaatggcatgctgattaatgat 748
>gnl|LJGI|TC71163 similar to UniRef100_A7QRL0 Cluster: Chromosome undetermined
scaffold_151, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_151, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(10%)
Length = 707
Score = 872 bits (440), Expect = 0.0
Identities = 440/440 (100%)
Strand = Plus / Plus
Query: 1541 ccaaccaagggtttagatatatggccaccaatcgaaatggtatggacccatctgttgttc 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaaccaagggtttagatatatggccaccaatcgaaatggtatggacccatctgttgttc 60
Query: 1601 ctcaaagttcagtgggtccagtgatgcccatgccctttgatggttatggagttactgcag 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcaaagttcagtgggtccagtgatgcccatgccctttgatggttatggagttactgcag 120
Query: 1661 ctcctgctgaaaatcagcgtcccgcggtgtcatctgccacacttgcctcaactttggctt 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcctgctgaaaatcagcgtcccgcggtgtcatctgccacacttgcctcaactttggctt 180
Query: 1721 ctgctaccccagaaaatcagcgcctgatgttgggagaacatctatatcccctcgtggagc 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgctaccccagaaaatcagcgcctgatgttgggagaacatctatatcccctcgtggagc 240
Query: 1781 atcttaccccaaaccaacatactgcaaaggtgactgggatgttgctggagatggaccagt 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcttaccccaaaccaacatactgcaaaggtgactgggatgttgctggagatggaccagt 300
Query: 1841 cagaggtaatacatcttattgaatctcctgaggacctgaagatgaaggtgtctgaggcat 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cagaggtaatacatcttattgaatctcctgaggacctgaagatgaaggtgtctgaggcat 360
Query: 1901 tgcgggtccttcgtgatgctgctgcaccaggttctgaagttagtgatcagcttggctcat 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgcgggtccttcgtgatgctgctgcaccaggttctgaagttagtgatcagcttggctcat 420
Query: 1961 tctcattgaatgaatgaaat 1980
||||||||||||||||||||
Sbjct: 421 tctcattgaatgaatgaaat 440
>gnl|LJGI|AV775939 weakly similar to UniRef100_A7QRL0 Cluster: Chromosome undetermined
scaffold_151, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_151, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(14%)
Length = 409
Score = 535 bits (270), Expect = e-151
Identities = 332/349 (95%), Gaps = 4/349 (1%)
Strand = Plus / Plus
Query: 1229 attttgctcaaatccaagtacctggtggaatggcacctctgcctgcaggaattcctggat 1288
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct: 11 attttgctcaaatc-aagt--ctggtggaatggtacctctgcctgcaggaattcctgcat 67
Query: 1289 atcatgcagggaccccaagacttgcccctcaacagctatattatggtcaagggtcacctg 1348
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 68 atcatgcaggcaccccaagacttgcccctcaatagctatattatggtcaagggtcacctg 127
Query: 1349 gcttcatgccccctcagcctgctggatatggtttccagcagcaaatgttgccaggaatgc 1408
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gcttcatgccccctcagcctgatggatatggtttccagcagcaaatgttgccaggaatgc 187
Query: 1409 ggcctggtgttgctccaaatttcattatgccataccaggttcagagacagggtcagcctg 1468
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 188 gggctggtgttgctccaaatttcattatgccataccaggtacagagacagggtcagcctg 247
Query: 1469 ggcagagaatgggtggtcgacgaaatggaaacctccaatcagggcagccgaatcaagtgc 1528
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 248 ggcagagagtgggtggtcgaggaaatggaaacctccaatcagggcagccgaagcaagtgc 307
Query: 1529 cacatcgcaactcca-accaagggtttagatatatggccaccaatcgaa 1576
||||||||||||||| | |||||||||| |||| |||||||||||||||
Sbjct: 308 cacatcgcaactccagagcaagggtttatatatctggccaccaatcgaa 356
>gnl|LJGI|TC59135 similar to UniRef100_Q9M549 Cluster: Poly(A)-binding protein; n=1;
Cucumis sativus|Rep: Poly(A)-binding protein - Cucumis
sativus (Cucumber), partial (25%)
Length = 824
Score = 75.8 bits (38), Expect = 9e-13
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 480 tgatgcatctggtcagtcgaaagggtatggttttgtgcagtttgacaatgatgaggctgc 539
|||||| || || ||||| ||||| ||||| ||||| |||||||||| ||| | ||||
Sbjct: 709 tgatgcctcgggccagtccaaaggctatggctttgttcagtttgacactgagcaatctgc 768
Query: 540 ccagaatgccattaacaagttgaatggcatgctgattaatgataag 585
|||||||| ||| | |||||||||||||||||||| |||||||||
Sbjct: 769 gcagaatgcgattgataagttgaatggcatgctgatcaatgataag 814
>gnl|LJGI|BW607266 similar to UniRef100_Q00M91 Cluster: Poly(A)-binding protein; n=1;
Glycine max|Rep: Poly(A)-binding protein - Glycine max
(Soybean), partial (26%)
Length = 539
Score = 69.9 bits (35), Expect = 6e-11
Identities = 92/111 (82%)
Strand = Plus / Plus
Query: 487 tctggtcagtcgaaagggtatggttttgtgcagtttgacaatgatgaggctgcccagaat 546
||||| ||||| ||||| |||||||||||||| ||||| ||||| || |||| || |||
Sbjct: 264 tctggccagtctaaaggctatggttttgtgcaatttgagaatgaagaatctgcacaaaat 323
Query: 547 gccattaacaagttgaatggcatgctgattaatgataagaaagtctatgtt 597
|| ||| |||| || ||||||| ||||||| ||||||| | |||||||||
Sbjct: 324 gctattgacaatttcaatggcaagctgattggtgataaggaggtctatgtt 374
>gnl|LJGI|TC59012 similar to UniRef100_Q00M91 Cluster: Poly(A)-binding protein; n=1;
Glycine max|Rep: Poly(A)-binding protein - Glycine max
(Soybean), partial (24%)
Length = 846
Score = 60.0 bits (30), Expect = 6e-08
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 487 tctggtcagtcgaaagggtatggttttgtgcagtttgacaatgatgaggctgcccagaat 546
||||| ||||| ||||| |||||||||||||| ||||| ||||| || |||| || |||
Sbjct: 753 tctggccagtctaaaggctatggttttgtgcaatttgagaatgaagaatctgcacaaaat 812
Query: 547 gccattaacaagttgaatggcatgctgatt 576
|| ||| |||| || ||||||| |||||||
Sbjct: 813 gctattgacaatttcaatggcaagctgatt 842
>gnl|LJGI|TC77811 similar to UniRef100_Q9M549 Cluster: Poly(A)-binding protein; n=1;
Cucumis sativus|Rep: Poly(A)-binding protein - Cucumis
sativus (Cucumber), partial (97%)
Length = 2698
Score = 56.0 bits (28), Expect = 9e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1198 aaagaagacaggaaggctcgattgcaggctcattttgctcaaat 1241
||||||||||| | ||||||||||||||||| |||||||||||
Sbjct: 1472 aaagaagacagaagagctcgattgcaggctcaatttgctcaaat 1515