Miyakogusa Predicted Gene

Lj5g3v1889480.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1889480.2 tr|F6HJC9|F6HJC9_VITVI tRNA pseudouridine
synthase A OS=Vitis vinifera GN=truA PE=3 SV=1,67.51,0,Pseudouridine
synthase,Pseudouridine synthase, catalytic domain; TruA,Pseudouridine
synthase I, TruA,CUFF.56115.2
         (1284 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW624793 similar to UniRef100_Q9FX23 Cluster: Pseudouri...   809   0.0  
gnl|LJGI|DC597674 similar to UniRef100_A7QRM8 Cluster: Pseudouri...   228   7e-59
gnl|LJGI|AV777154 similar to UniRef100_A7QRM8 Cluster: Pseudouri...   127   2e-28

>gnl|LJGI|BW624793 similar to UniRef100_Q9FX23 Cluster: Pseudouridylate synthase; n=1;
           Arabidopsis thaliana|Rep: Pseudouridylate synthase -
           Arabidopsis thaliana (Mouse-ear cress), partial (17%)
          Length = 487

 Score =  809 bits (408), Expect = 0.0
 Identities = 411/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgacgcaactgagcgatgtcgaccacatagccaccttgcaagctagggtcaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  atggcgacgcaactgagcgatgtcgaccacatagccaccttgcaagctagggtcaaggaa 135

                                                                       
Query: 61  ttagaagccgagaatgcaaagctattatctcaacttgctgattctcacattcatgagatg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttagaagctgagaatgcaaagctattatctcaacttgctgattctcacattcatgagatg 195

                                                                       
Query: 121 gagaaaaagttacatgtttctggtgagaaaaacacgggatcgataaaaggcaaccgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gagaaaaagttacatgtttctggtgagaaaaacacgggatcgataaaaggcaaccgaaaa 255

                                                                       
Query: 181 tcagaagagaagatagagaaaatgacaggctataatacaaggtttatgagtcaccatagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcagaagagaagatagagaaaatgacaggctataatacaaggtttatgagtcaccatagc 315

                                                                       
Query: 241 aagagatatgtagctttaaaagtcatgtactttggaaaaaggttctatggttttgcttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aagagatatgtagctttaaaagtcatgtactttggaaaaaggttctatggttttgcttca 375

                                                                       
Query: 301 gaggctcaaatggaaccaacagttgagtctgaaatttttaaagctcttgcgaaaataagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaggctcaaatggaaccaacagttgagtctgaaatttttaaagctcttgcgaaaataagg 435

                                                               
Query: 361 ctattggttggtgataagaaggagtcacagtattcaagatgtggtagaacag 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctattggttggtgataagaaggagtcacagtattcaagatgtggtagaacag 487


>gnl|LJGI|DC597674 similar to UniRef100_A7QRM8 Cluster: Pseudouridylate synthase; n=1;
           Vitis vinifera|Rep: Pseudouridylate synthase - Vitis
           vinifera (Grape), partial (10%)
          Length = 576

 Score =  228 bits (115), Expect = 7e-59
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 205 acaggctataatacaaggtttatgagtcaccatagcaagagatatgtagctttaaaagtc 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acaggctataatacaaggtttatgagtcaccatagcaagagatatgtagctttaaaagtc 521

                                                                  
Query: 265 atgtactttggaaaaaggttctatggttttgcttcagaggctcaaatggaaccaa 319
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atgtactttggaaaaaggttctatggttttgcttcagaggctcaaatggaaccaa 576



 Score =  167 bits (84), Expect = 2e-40
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 126 aaagttacatgtttctggtgagaaaaacacgggatcgataaaaggcaaccgaaaatcaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaagttacatgtttctggtgagaaaaacacgggatcgataaaaggcaaccgaaaatcaga 60

                                   
Query: 186 agagaagatagagaaaatgacagg 209
           ||||||||||||||||||||||||
Sbjct: 61  agagaagatagagaaaatgacagg 84


>gnl|LJGI|AV777154 similar to UniRef100_A7QRM8 Cluster: Pseudouridylate synthase; n=1;
           Vitis vinifera|Rep: Pseudouridylate synthase - Vitis
           vinifera (Grape), partial (5%)
          Length = 373

 Score =  127 bits (64), Expect = 2e-28
 Identities = 64/64 (100%)
 Strand = Plus / Minus

                                                                       
Query: 619 aggttcagctgtttaagcagggagtataaatatttcttttggaaagagggtttgaatatt 678
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  aggttcagctgtttaagcagggagtataaatatttcttttggaaagagggtttgaatatt 24

               
Query: 679 ccgg 682
           ||||
Sbjct: 23  ccgg 20