Miyakogusa Predicted Gene
- Lj5g3v1888380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1888380.1 Non Chatacterized Hit- tr|I1NH73|I1NH73_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22176
PE,74.1,0,RRM_1,RNA recognition motif domain; CSTF2_hinge,Cleavage
stimulation factor subunit 2, hinge domain;,CUFF.56100.1
(1581 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59300 similar to UniRef100_A7QRN6 Cluster: Chromosome... 1368 0.0
gnl|LJGI|TC67840 similar to UniRef100_A7QRN6 Cluster: Chromosome... 1090 0.0
gnl|LJGI|TC71480 similar to UniRef100_A7QRN7 Cluster: Chromosome... 704 0.0
>gnl|LJGI|TC59300 similar to UniRef100_A7QRN6 Cluster: Chromosome undetermined
scaffold_151, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_151,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (39%)
Length = 764
Score = 1368 bits (690), Expect = 0.0
Identities = 693/694 (99%)
Strand = Plus / Plus
Query: 1 atggcttcctctcagtcccagcatcgttgcgttttcgttgggaatataccgtatgatgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atggcttcctctcagtcccagcatcgttgcgttttcgttgggaatataccgtatgatgcc 130
Query: 61 acagaggaacagcttattgaaatctgccaggaggttggtcctgtagtatcattcagatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 acagaggaacagcttattgaaatctgccaggaggttggtcctgtagtatcattcagatta 190
Query: 121 gttattgaccgagaaaccgggaaaccgaaaggctatgggttctgtgagtataaggatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gttattgaccgagaaaccgggaaaccgaaaggctatgggttctgtgagtataaggatgaa 250
Query: 181 gagacagctttaagtgctcgtcgaaatcttcagggttatgaaattaatgggcggcagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gagacagctttaagtgctcgtcgaaatcttcagggttatgaaattaatgggcggcagttg 310
Query: 241 cgtgttgatttcgctgaaaatgataaagggaatgatagaaatagagaacagggtcgtggt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cgtgttgattttgctgaaaatgataaagggaatgatagaaatagagaacagggtcgtggt 370
Query: 301 gggcctggaatgacagcaaatgttgacactcagaaacaagcaggcattccagttgttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gggcctggaatgacagcaaatgttgacactcagaaacaagcaggcattccagttgttcat 430
Query: 361 ggggaagctgttcagcatcaacctattggtcttcatattgccatatcagcagcaactgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggggaagctgttcagcatcaacctattggtcttcatattgccatatcagcagcaactgcc 490
Query: 421 atgacagcagctctaggtggtcctcagtctggcatccattctaaccaaaatagtttgcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atgacagcagctctaggtggtcctcagtctggcatccattctaaccaaaatagtttgcag 550
Query: 481 agtcagtcagcattggcacatgatcctttaactttgcatctggccaaaatgtccaggttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtcagtcagcattggcacatgatcctttaactttgcatctggccaaaatgtccaggttt 610
Query: 541 caattgattgaggttatctctgagctcaagggaatggctacacaaaacaatgatctggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caattgattgaggttatctctgagctcaagggaatggctacacaaaacaatgatctggct 670
Query: 601 cgccagctgttgctttcgaggccacagttgcccaaggcactttttcaggctcagataatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cgccagctgttgctttcgaggccacagttgcccaaggcactttttcaggctcagataatg 730
Query: 661 ctacaaatggtgaccccccaagtgttacaaatgc 694
||||||||||||||||||||||||||||||||||
Sbjct: 731 ctacaaatggtgaccccccaagtgttacaaatgc 764
>gnl|LJGI|TC67840 similar to UniRef100_A7QRN6 Cluster: Chromosome undetermined
scaffold_151, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_151,
whole genome shotgun sequence - Vitis vinifera (Grape),
partial (27%)
Length = 699
Score = 1090 bits (550), Expect = 0.0
Identities = 564/566 (99%), Gaps = 2/566 (0%)
Strand = Plus / Plus
Query: 1 atggcttcctctcagtcccagcatcgttgcgttttcgttgggaatataccgtatgatgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atggcttcctctcagtcccagcatcgttgcgttttcgttgggaatataccgtatgatgcc 195
Query: 61 acagaggaacagcttattgaaatctgccaggaggttggtcctgtagtatcattcagatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 acagaggaacagcttattgaaatctgccaggaggttggtcctgtagtatcattcagatta 255
Query: 121 gttattgaccgagaaaccgggaaaccgaaaggctatgggttctgtgagtataaggatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttattgaccgagaaaccgggaaaccgaaaggctatgggttctgtgagtataaggatgaa 315
Query: 181 gagacagctttaagtgctcgtcgaaatcttcagggttatgaaattaatgggcggcagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagacagctttaagtgctcgtcgaaatcttcagggttatgaaattaatgggcggcagttg 375
Query: 241 cgtgttgatttcgctgaaaatgataaagggaatgatagaaatagagaacagggtcgtggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cgtgttgatttcgctgaaaatgataaagggaatgatagaaatagagaacagggtcgtggt 435
Query: 301 gggcctggaatgacagcaaatgttgacactcagaaacaagcaggcattccagttgttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gggcctggaatgacagcaaatgttgacactcagaaacaagcaggcattccagttgttcat 495
Query: 361 ggggaagctgttcagcatcaacctattggtcttcatattgccatatcagcagcaactgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggggaagctgttcagcatcaacctattggtcttcatattgccatatcagcagcaactgcc 555
Query: 421 atgacagcagctctaggtggtcctcagtctggcatccattctaaccaaaatagtttgcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atgacagcagctctaggtggtcctcagtctggcatccattctaaccaaaatagtttgcag 615
Query: 481 agtcagtcagcattggcacatgatcctttaactttgcatctggccaaaatgtccaggttt 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 616 agtcagtcagcattggcacatgatcctttaactttgcatctggcc-aaatgtccaggttt 674
Query: 541 caattgattgaggttatctctgagct 566
||||||||||| ||||||||||||||
Sbjct: 675 caattgattga-gttatctctgagct 699
>gnl|LJGI|TC71480 similar to UniRef100_A7QRN7 Cluster: Chromosome undetermined
scaffold_151, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_151, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(39%)
Length = 679
Score = 704 bits (355), Expect = 0.0
Identities = 364/367 (99%)
Strand = Plus / Plus
Query: 1215 agtagagaaaacaaacatggttcaggatttttcagaatctttcactcacccatcaaaatt 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtagagaaaacaaacatggttcaggatttttcagaatctttcactcacccatcaaaatt 60
Query: 1275 catgagatcagataagggaaggatcccttctcttcctgcggggattaaagacttgcctgt 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catgagatcagataagggaaggatcccttctcttcctgcggggattaaagacttgcctgt 120
Query: 1335 caccattggatcttcccatgttcttggaagtagctcattacctgcacctacagcctctaa 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caccattggatcttcccatgttcttggaagtagctcattacctgcacctacagcctctaa 180
Query: 1395 agcagaagtgcggtaccctgagccgcaatcttctcagccccagcttccacctgatgtgga 1454
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 agcagaagtgcggtagcctgagccgcaatcttttcagccccagcttccacctgatgtgga 240
Query: 1455 gtctgttttactgcaacaagtgttgaatctaacaccagagcaattgagttccttgccacc 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtctgttttactgcaacaagtgttgaatctaacaccagagcaattgagttccttgccacc 300
Query: 1515 agagcagcaacaacaggtcattcagctccagaagtctcttcgacaagatcatatgcagcc 1574
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 agagcagcaacaacaggtcattcagctccagaagtcttttcgacaagatcatatgcagcc 360
Query: 1575 ttcataa 1581
|||||||
Sbjct: 361 ttcataa 367