Miyakogusa Predicted Gene

Lj5g3v1871880.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1871880.1 Non Chatacterized Hit- tr|B9S9Q5|B9S9Q5_RICCO 30S
ribosomal protein S10, putative OS=Ricinus communi,100,2e-32,Ribosomal
protein S10,Ribosomal protein S10; RIBOSOMALS10,Ribosomal protein S10;
no description,Ribo,NODE_21703_length_544_cov_773.376831.path2.1
         (202 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC57707 homologue to UniRef100_A1YMX4 Cluster: 30S ribo...   400   e-111

>gnl|LJGI|TC57707 homologue to UniRef100_A1YMX4 Cluster: 30S ribosomal protein
           S10-like; n=1; Brassica rapa|Rep: 30S ribosomal protein
           S10-like - Brassica campestris (Field mustard), partial
           (59%)
          Length = 922

 Score =  400 bits (202), Expect = e-111
 Identities = 202/202 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtcctgtgccattaccaacaaagaaacggatttactgtgttctgaaatcccctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atgggtcctgtgccattaccaacaaagaaacggatttactgtgttctgaaatcccctcac 486

                                                                       
Query: 61  gttcacaaggatgctcggttccatttcgagatcagaactcatcagcgcctcattgatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gttcacaaggatgctcggttccatttcgagatcagaactcatcagcgcctcattgatatt 546

                                                                       
Query: 121 ctatatcctacagctcaaactatagattccttgatgcaacttgatcttcctgctggtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctatatcctacagctcaaactatagattccttgatgcaacttgatcttcctgctggtgtt 606

                                 
Query: 181 gatgtggaggtcaagctctaga 202
           ||||||||||||||||||||||
Sbjct: 607 gatgtggaggtcaagctctaga 628