Miyakogusa Predicted Gene
- Lj5g3v1864530.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1864530.1 Non Chatacterized Hit- tr|B9RZ99|B9RZ99_RICCO 50S
ribosomal protein L21, mitochondrial, putative OS=,44.93,2e-18,50S
RIBOSOMAL PROTEIN L21,Ribosomal protein L21; seg,NULL;
Ribosomal_L21,Ribosomal protein L21; Ribo,CUFF.56086.1
(639 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57621 weakly similar to UniRef100_A7PZC9 Cluster: 50S... 1227 0.0
gnl|LJGI|GO010169 weakly similar to UniRef100_A7PZC9 Cluster: 50... 547 e-155
gnl|LJGI|AV773070 weakly similar to UniRef100_P24613 Cluster: 50... 345 2e-94
gnl|LJGI|AV770619 similar to UniRef100_P24613 Cluster: 50S ribos... 200 8e-51
>gnl|LJGI|TC57621 weakly similar to UniRef100_A7PZC9 Cluster: 50S ribosomal protein
L21; n=1; Vitis vinifera|Rep: 50S ribosomal protein L21
- Vitis vinifera (Grape), partial (54%)
Length = 955
Score = 1227 bits (619), Expect = 0.0
Identities = 634/639 (99%)
Strand = Plus / Plus
Query: 1 atggcttctgcaactgcaatcgtttccacactctgcgcttctttcggaacccactgcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 atggcttctgcaactgcaatcgtttccacactctgcgcttctttcggaacccactgcacc 107
Query: 61 attacctccacctccaaacctctattctcccaaacttcccattctcgcttcccaactcac 120
||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 108 atttcctccacctccaaacctctattctctcaatcttcccattctcgcttcccttctcac 167
Query: 121 tctaacaagctctctctacaaccacccacgttcaccctgcgttttcctctcctacccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tctaacaagctctctctacaaccacccacgttcaccctgcgttttcctctcctacccttc 227
Query: 181 cccaaggtctcagaatctgcggttgctgagctcgagactgatgtaacgactcctcagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cccaaggtctcagaatctgcggttgctgagctcgagactgatgtaacgactcctcagcct 287
Query: 241 gaagctggcgaaattgtcccggcgcagcctccttcttgggaaccgggtctcttcgctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaagctggcgaaattgtcccggcgcagcctccttcttgggaaccgggtctcttcgctgtg 347
Query: 301 gtcatggttggcgggcgccaatatattgttcaccccgggcgctggattgttgttcagagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtcatggttggcgggcgccaatatattgttcaccccgggcgctggattgttgttcagagg 407
Query: 361 ctgaaaggtgctaaggctaacgacaagattgccctacagaaggttttactggttggcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgaaaggtgctaaggctaacgacaagattgccctacagaaggttttactggttggcaca 467
Query: 421 gatacatcttgctacattgggaaaccaatagtatcaaatgctgtggtatatgctacggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gatacatcttgctacattgggaaaccaatagtatcaaatgctgtggtatatgctacggtg 527
Query: 481 gaagaacagggttttgaccccaaagtaattgtcttcaaatataaacgaaagaagcactat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaagaacagggttttgaccccaaagtaattgtcttcaaatataaacgaaagaagcactat 587
Query: 541 cgcagaacttatgggcacaaacagccacatacacgtttacggataaacagcattatgggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cgcagaacttatgggcacaaacagccacatacacgtttacggataaacagcattatgggc 647
Query: 601 tatgagaactatcctaaagttacgatggatgatgtcaag 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tatgagaactatcctaaagttacgatggatgatgtcaag 686
>gnl|LJGI|GO010169 weakly similar to UniRef100_A7PZC9 Cluster: 50S ribosomal protein
L21; n=1; Vitis vinifera|Rep: 50S ribosomal protein L21
- Vitis vinifera (Grape), partial (43%)
Length = 731
Score = 547 bits (276), Expect = e-155
Identities = 296/300 (98%), Gaps = 2/300 (0%)
Strand = Plus / Plus
Query: 340 cgctggattgttgttcagaggctgaaaggtgctaaggctaacgacaagattgccctacag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cgctggattgttgttcagaggctgaaaggtgctaaggctaacgacaagattgccctacag 462
Query: 400 aaggttttactggttggcacagatacatcttgctacattgggaaaccaatagtatcaaat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aaggttttactggttggcacagatacatcttgctacattgggaaaccaatagtatcaaat 522
Query: 460 gctgtggtatatgctacggtggaagaacagggttttgaccccaaagtaattgtcttcaaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gctgtggtatatgctacggtggaagaacagggttttgaccccaaagtaattgtcttcaaa 582
Query: 520 tataaacgaaagaagcactatcgcagaacttatgggcacaaacagccacatacacgttta 579
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tataaacgaaagaagcaatatcgcagaacttatgggcacaaacagccacatacacgttta 642
Query: 580 cggataaacagcattatgggctatgagaactatcctaaagttacgatggatgatgtcaag 639
| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 643 cagataaacagcattatgggctatgag-actatcctaaag-tacgatggatgatgtcaag 700
Score = 450 bits (227), Expect = e-126
Identities = 281/299 (93%)
Strand = Plus / Plus
Query: 1 atggcttctgcaactgcaatcgtttccacactctgcgcttctttcggaacccactgcacc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 48 atggcttctgcaactgcaatcgtttccacactctgcgcttctttcggaactcactgcacc 107
Query: 61 attacctccacctccaaacctctattctcccaaacttcccattctcgcttcccaactcac 120
||| || |||||||||||||||||||||| ||| ||||| |||||||||||| ||||
Sbjct: 108 atttcccccacctccaaacctctattctctcaatcttccacttctcgcttcccttctcat 167
Query: 121 tctaacaagctctctctacaaccacccacgttcaccctgcgttttcctctcctacccttc 180
|| |||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct: 168 tccaacaagctctctttacaaccacccacgttcgcccagcgttttcctctcctacccctc 227
Query: 181 cccaaggtctcagaatctgcggttgctgagctcgagactgatgtaacgactcctcagcct 240
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 228 cccaaggtctcagaatctgcggttgctgagccggagattgatgtaacgactcctcagcct 287
Query: 241 gaagctggcgaaattgtcccggcgcagcctccttcttgggaaccgggtctcttcgctgt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaagctggcgaaattgtcccggcgcagcctccttcttgggaaccgggtctcttcgctgt 346
>gnl|LJGI|AV773070 weakly similar to UniRef100_P24613 Cluster: 50S ribosomal protein
L21, chloroplast precursor; n=1; Spinacia oleracea|Rep:
50S ribosomal protein L21, chloroplast precursor -
Spinacia oleracea (Spinach), partial (21%)
Length = 459
Score = 345 bits (174), Expect = 2e-94
Identities = 264/286 (92%), Gaps = 6/286 (2%)
Strand = Plus / Minus
Query: 360 gctgaaaggtgctaaggctaacgacaagattgccctacagaaggttttactggttggcac 419
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 459 gctgaaaggtgctaaggctaacgaccagattgccctaccgaaggttttattggttggcac 400
Query: 420 agatacatcttgctacattgggaaaccaatagtatcaaatgctgtggtatatgct-acgg 478
|||||||||||||| | |||||||||| ||||||||||||||||||||||||| | ||||
Sbjct: 399 agatacatcttgcttccttgggaaacccatagtatcaaatgctgtggtatatgttaacgg 340
Query: 479 tggaaga-acagggttttgaccccaaagta-attgtcttcaaatataaacgaaagaagca 536
||||||| || || |||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 339 tggaagacacgggcttttgacccccaactacattgtcttcaaatataaacgaaagaagca 280
Query: 537 ctatcgcagaacttatgggcacaaacagccaca-taca-cgtttacggataaacagcatt 594
|||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||
Sbjct: 279 ctatcgcagaacttatgggcacgacacgccacactacaccgtttacggataaacagcatt 220
Query: 595 a-tgggctatgagaactatcctaaagttacgatggatgatgtcaag 639
| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 219 actgggttatgagaactatcctaaagttacgatggatgatgtcaag 174
>gnl|LJGI|AV770619 similar to UniRef100_P24613 Cluster: 50S ribosomal protein L21,
chloroplast precursor; n=1; Spinacia oleracea|Rep: 50S
ribosomal protein L21, chloroplast precursor - Spinacia
oleracea (Spinach), partial (12%)
Length = 375
Score = 200 bits (101), Expect = 8e-51
Identities = 187/201 (93%), Gaps = 11/201 (5%)
Strand = Plus / Minus
Query: 449 tagtatcaaatgctgtggtatatgctacggtggaagaacagggttttgaccccaaagtaa 508
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 375 tagtatcaaatgctgtggtatatgctacggtggaagaacaggcttttgaccccaaagtaa 316
Query: 509 ttgtcttcaaatataaacgaaagaagcactatcgcagaacttat-gggcaca-aaca-gc 565
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct: 315 ttgtcttcaaatataaacgaaagaagcactatcgcagaacttatagggcacaggacacgc 256
Query: 566 cacatacacgtt-tac-ggataaac-agcatt-at-gggcta-tgagaactatcc-taaa 618
|||||||||||| ||| ||||| || |||||| || |||||| |||||||||||| ||||
Sbjct: 255 cacatacacgttctacnggatacactagcattcatcgggctagtgagaactatccntaaa 196
Query: 619 gttacgatgg-atgatgtcaa 638
|||||||||| ||||||||||
Sbjct: 195 gttacgatggcatgatgtcaa 175