Miyakogusa Predicted Gene
- Lj5g3v1796950.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1796950.1 Non Chatacterized Hit- tr|I1NHH9|I1NHH9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,78.77,0,ZINC FINGER
DHHC DOMAIN CONTAINING PROTEIN,NULL; ZF_DHHC,Zinc finger, DHHC-type,
palmitoyltransferas,CUFF.55959.1
(546 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS343310 weakly similar to UniRef100_A7PI09 Cluster: Ch... 954 0.0
gnl|LJGI|BW596026 52 4e-06
gnl|LJGI|TC69937 similar to UniRef100_Q3HY29 Cluster: Cyclooxyge... 52 4e-06
>gnl|LJGI|FS343310 weakly similar to UniRef100_A7PI09 Cluster: Chromosome chr13
scaffold_17, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_17, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (67%)
Length = 652
Score = 954 bits (481), Expect = 0.0
Identities = 508/521 (97%)
Strand = Plus / Plus
Query: 25 tctctaccagtgttggcagtgttgttgttgatgctttttgtgtattacactacaatcttc 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctctaccagtgttggcagtgttgttgttgatgctttttgtgtattacactacaatcttc 60
Query: 85 atcttcctccatgattggctcagtttacacacctcacctggaaccttgaatgcctccatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcttcctccatgattggctcagtttacacacctcacctggaaccttgaatgcctccatc 120
Query: 145 ttcaccctcttcgcctctctcaccattttctctttctttgtttgcgtcctcactgacccg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcaccctcttcgcctctctcaccattttctctttctttgtttgcgtcctcactgacccg 180
Query: 205 ggtcatgttccttcttcctacgttcctgatgttgaggccagagattccaattcccatcaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtcatgttccttcttcctacgttcctgatgttgaggccagagattccaattcccatcaa 240
Query: 265 tttgccaaagataatgcagaacggaagaaatgtgacaagtgctttgcatacaagcctccg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttgccaaagataatgcagaacggaagaaatgtgacaagtgctttgcatacaagcctccg 300
Query: 325 aggactcatcattgcagggtctgtagaaggtgtattctgaaaatggatcatcactgcttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggactcatcattgcagggtctgtagaaggtgtattctgaaaatggatcatcactgcttg 360
Query: 385 tggataaataattgtgttggttattggaattataaagcannnnnnnnnnnngtatcatat 444
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 tggataaataattgtgttggttattggaattataaagcattttttgtttttgtatcatat 420
Query: 445 gccaccatagcaagtctttattctatggttatatttataagctgcgtgtttcagaaggac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccaccatagcaagtctttattctatggttatatttataagctgcgtgtttcagaaggac 480
Query: 505 tggcaacccattaaggagagttctcttcagatctattatgt 545
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 481 tggcaacccattaaggagagttctcttaagatctattatgt 521
>gnl|LJGI|BW596026
Length = 457
Score = 52.0 bits (26), Expect = 4e-06
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 138 ctccatcttcaccctcttcgcctctctcaccattttctctttctttgtttgcg 190
|||||||||||| |||||||||||||| || | |||| ||||||||||||||
Sbjct: 16 ctccatcttcactctcttcgcctctct--ccctcttctatttctttgtttgcg 66
>gnl|LJGI|TC69937 similar to UniRef100_Q3HY29 Cluster: Cyclooxygenase 1b2; n=1; Homo
sapiens|Rep: Cyclooxygenase 1b2 - Homo sapiens (Human),
partial (3%)
Length = 1257
Score = 52.0 bits (26), Expect = 4e-06
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Plus
Query: 138 ctccatcttcaccctcttcgcctctctcaccattttctctttctttgtttgcg 190
|||||||||||| |||||||||||||| || | |||| ||||||||||||||
Sbjct: 57 ctccatcttcactctcttcgcctctct--ccctcttctgtttctttgtttgcg 107