Miyakogusa Predicted Gene
- Lj5g3v1793520.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1793520.1 tr|Q8LK15|Q8LK15_BRANA Extensin OS=Brassica napus
GN=extC PE=4 SV=1,40.7,0.0002,seg,NULL,CUFF.56035.1
(1164 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AW428673 similar to UniRef100_O24099 Cluster: MtN12 pro... 670 0.0
gnl|LJGI|TC77459 weakly similar to UniRef100_O24099 Cluster: MtN... 212 4e-54
gnl|LJGI|BW594613 similar to UniRef100_Q94ES9 Cluster: Root nodu... 111 1e-23
gnl|LJGI|TC81952 similar to UniRef100_Q94ES6 Cluster: Root nodul... 111 1e-23
gnl|LJGI|TC75620 similar to UniRef100_Q94ES8 Cluster: Root nodul... 111 1e-23
>gnl|LJGI|AW428673 similar to UniRef100_O24099 Cluster: MtN12 protein; n=1; Medicago
truncatula|Rep: MtN12 protein - Medicago truncatula
(Barrel medic), partial (39%)
Length = 338
Score = 670 bits (338), Expect = 0.0
Identities = 338/338 (100%)
Strand = Plus / Plus
Query: 288 tcactctcctcccaacattcatccagtttaccactctcctccaccaccagttagaaggtg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcactctcctcccaacattcatccagtttaccactctcctccaccaccagttagaaggtg 60
Query: 348 ccctcccaatgatagaaagtgccctcccaagcgagagcttcactctcctccaccacgagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccctcccaatgatagaaagtgccctcccaagcgagagcttcactctcctccaccacgagt 120
Query: 408 tagaaggtgccttcccaatgttagaaggtgccctcccaagcctgagcttcactctcctcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagaaggtgccttcccaatgttagaaggtgccctcccaagcctgagcttcactctcctcc 180
Query: 468 accaccagttagaaggtgccctcccaatgatagaaggtgccctcccaagcctgtgcttca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accaccagttagaaggtgccctcccaatgatagaaggtgccctcccaagcctgtgcttca 240
Query: 528 ctctcctccaccaccagttcacacttcccctcccaatgatattcctcacccaattcacca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctctcctccaccaccagttcacacttcccctcccaatgatattcctcacccaattcacca 300
Query: 588 ttctcctccaccaccagttagaaggtgccctcccaatg 625
||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttctcctccaccaccagttagaaggtgccctcccaatg 338
Score = 260 bits (131), Expect = 2e-68
Identities = 143/147 (97%)
Strand = Plus / Plus
Query: 589 tctcctccaccaccagttagaaggtgccctcccaatgatagaaggtgccctcccaagcct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tctcctccaccaccagttagaaggtgccctcccaatgatagaaggtgccctcccaagcct 232
Query: 649 ctgcttcactctcctccaccaccagttcacacctcccctcccaatgatattcctcgccca 708
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 233 gtgcttcactctcctccaccaccagttcacacttcccctcccaatgatattcctcaccca 292
Query: 709 attcagcattctcctccaccaccagtt 735
||||| |||||||||||||||||||||
Sbjct: 293 attcaccattctcctccaccaccagtt 319
Score = 180 bits (91), Expect = 1e-44
Identities = 185/216 (85%), Gaps = 9/216 (4%)
Strand = Plus / Plus
Query: 589 tctcctccaccaccagttagaaggtgccctcccaatgatagaaggtgccctcccaagcct 648
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 104 tctcctccaccacgagttagaaggtgccttcccaatgttagaaggtgccctcccaagcct 163
Query: 649 ctgcttcactctcctccaccaccagttcacacctcccctcccaatgata----ttcctcg 704
||||||||||||||||||||||||| | | |||||||||||||| | | |
Sbjct: 164 gagcttcactctcctccaccaccagttagaaggtgccctcccaatgatagaaggtgccct 223
Query: 705 cccaa-----ttcagcattctcctccaccaccagtttacccttcccctcccaatgatatt 759
||||| | | || |||||||||||||||||| || ||||||||||||||||||||
Sbjct: 224 cccaagcctgtgcttcactctcctccaccaccagttcacacttcccctcccaatgatatt 283
Query: 760 cctcccccaattcaccattctcctccaccaccagtt 795
|||| |||||||||||||||||||||||||||||||
Sbjct: 284 cctcacccaattcaccattctcctccaccaccagtt 319
Score = 127 bits (64), Expect = 2e-28
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 584 accattctcctccaccaccagttagaaggtgccctcccaatgatagaaggtgccctccca 643
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 30 accactctcctccaccaccagttagaaggtgccctcccaatgatagaaagtgccctccca 89
Query: 644 agcctctgcttcactctcctccaccaccagtt 675
||| |||||||||||||||||||| ||||
Sbjct: 90 agcgagagcttcactctcctccaccacgagtt 121
Score = 87.7 bits (44), Expect = 1e-16
Identities = 70/78 (89%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 778 tctcctccaccaccagtttacgcttcccctccccat---attcctcccccaattcagcat 834
|||||||||||||||||| || ||||||||||| || ||||||| ||||||||| |||
Sbjct: 242 tctcctccaccaccagttcacacttcccctcccaatgatattcctcacccaattcaccat 301
Query: 835 tctcctccaccaccagtt 852
||||||||||||||||||
Sbjct: 302 tctcctccaccaccagtt 319
Score = 71.9 bits (36), Expect = 9e-12
Identities = 68/78 (87%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 835 tctcctccaccaccagtttacccttcccttccccat---attcctcccccaattcagcat 891
|||||||||||||||||| || |||||| |||| || ||||||| ||||||||| |||
Sbjct: 242 tctcctccaccaccagttcacacttcccctcccaatgatattcctcacccaattcaccat 301
Query: 892 tctcctcctccaccagtt 909
|||||||| |||||||||
Sbjct: 302 tctcctccaccaccagtt 319
>gnl|LJGI|TC77459 weakly similar to UniRef100_O24099 Cluster: MtN12 protein; n=1;
Medicago truncatula|Rep: MtN12 protein - Medicago
truncatula (Barrel medic), partial (66%)
Length = 541
Score = 212 bits (107), Expect = 4e-54
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 1051 gttcaaacttaccctccaaacattcctatcccaattgaccattctcctccaccagttccc 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gttcaaacttaccctccaaacattcctatcccaattgaccattctcctccaccagttccc 239
Query: 1111 attaaccatgccccacctcctccaccatatcgccataccggatctaataag 1161
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 240 attaaccatgccccacctcctccaccatatcaccataccggatctaataag 290
Score = 200 bits (101), Expect = 1e-50
Identities = 110/113 (97%)
Strand = Plus / Plus
Query: 872 ttcctcccccaattcagcattctcctcctccaccagttcaaacttaccctccccaaattc 931
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 ttccccccccaattcagcattctcctcctccaccaattcaaacttaccctccccaaattc 60
Query: 932 ctaatccaatttcccattctcctcctccaccaggccaaaattaccctccatac 984
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61 ctaatccaatttcccattctcctcctccaccaggccaaacttaccctccatac 113
Score = 113 bits (57), Expect = 3e-24
Identities = 126/149 (84%)
Strand = Plus / Plus
Query: 815 ttcctcccccaattcagcattctcctccaccaccagtttacccttcccttccccatattc 874
|||| ||||||||||||||||||||||| |||||| || | ||| || |||||| ||||
Sbjct: 1 ttccccccccaattcagcattctcctcctccaccaattcaaacttaccctccccaaattc 60
Query: 875 ctcccccaattcagcattctcctcctccaccagttcaaacttaccctccccaaattccta 934
|| |||||| ||||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 61 ctaatccaatttcccattctcctcctccaccaggccaaacttaccctccatacattccta 120
Query: 935 atccaatttcccattctcctcctccacca 963
| ||||||| || ||||||||||||||||
Sbjct: 121 acccaattttcctttctcctcctccacca 149
Score = 79.8 bits (40), Expect = 4e-14
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 889 cattctcctcctccaccagttcaaacttaccctccccaaattcctaatccaatttcccat 948
||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||
Sbjct: 162 cattctcctcctccaccagttcaaacttaccctccaaacattcctatcccaattgaccat 221
Query: 949 tctcctcc 956
||||||||
Sbjct: 222 tctcctcc 229
Score = 67.9 bits (34), Expect = 1e-10
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 936 tccaatttcccattctcctcctccaccaggccaaaattaccctcca 981
||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 152 tccaatttcccattctcctcctccaccagttcaaacttaccctcca 197
Score = 58.0 bits (29), Expect = 1e-07
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 758 ttcctcccccaattcaccattctcctccaccaccagtttacgcttcccctccccatattc 817
|||| ||||||||||| ||||||||||| |||||| || | ||| ||||||||| ||||
Sbjct: 1 ttccccccccaattcagcattctcctcctccaccaattcaaacttaccctccccaaattc 60
Query: 818 ctcccccaattcagcattctcctccaccaccag 850
|| |||||| ||||||||||| |||||||
Sbjct: 61 ctaatccaatttcccattctcctcctccaccag 93
Score = 54.0 bits (27), Expect = 2e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 1054 caaacttaccctccaaacattcctatcccaattgaccattctcctcc 1100
||||||||||||||| ||||||||| ||||||| || |||||||||
Sbjct: 96 caaacttaccctccatacattcctaacccaattttcctttctcctcc 142
Score = 52.0 bits (26), Expect = 8e-06
Identities = 61/72 (84%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 529 tctcctccaccaccagttcacacttcccctcccaatgatattcctcacccaattcaccat 588
|||||||| ||||||||||| |||| |||||| || |||||| ||||||| |||||
Sbjct: 165 tctcctcctccaccagttcaaacttaccctccaaac---attcctatcccaattgaccat 221
Query: 589 tctcctccacca 600
||||||||||||
Sbjct: 222 tctcctccacca 233
>gnl|LJGI|BW594613 similar to UniRef100_Q94ES9 Cluster: Root nodule extensin; n=1;
Pisum sativum|Rep: Root nodule extensin - Pisum sativum
(Garden pea), partial (28%)
Length = 486
Score = 111 bits (56), Expect = 1e-23
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 9 tctaatggcttccttttcaatcgctcttgcattgtccataatgttattcagtttcccatc 68
||||||||||||| |||||||| | ||||||||| |||||||| ||||||||||||||||
Sbjct: 6 tctaatggcttccatttcaatcacccttgcattgaccataatgctattcagtttcccatc 65
Query: 69 tgaaatttcagcaaac 84
||||||||||||||||
Sbjct: 66 tgaaatttcagcaaac 81
>gnl|LJGI|TC81952 similar to UniRef100_Q94ES6 Cluster: Root nodule extensin; n=1;
Pisum sativum|Rep: Root nodule extensin - Pisum sativum
(Garden pea), partial (79%)
Length = 811
Score = 111 bits (56), Expect = 1e-23
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 9 tctaatggcttccttttcaatcgctcttgcattgtccataatgttattcagtttcccatc 68
||||||||||||| |||||||| | ||||||||| |||||||| ||||||||||||||||
Sbjct: 14 tctaatggcttccatttcaatcacccttgcattgaccataatgctattcagtttcccatc 73
Query: 69 tgaaatttcagcaaac 84
||||||||||||||||
Sbjct: 74 tgaaatttcagcaaac 89
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 529 tctcctccaccaccagttcacacttcccctc 559
||||||||||||||||||||||||| |||||
Sbjct: 201 tctcctccaccaccagttcacacttaccctc 231
Score = 52.0 bits (26), Expect = 8e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 526 cactctcctccaccaccagttcacacttcccctc 559
|||||||| ||||||||||||||||||| |||||
Sbjct: 249 cactctcccccaccaccagttcacacttaccctc 282
>gnl|LJGI|TC75620 similar to UniRef100_Q94ES8 Cluster: Root nodule extensin; n=1;
Pisum sativum|Rep: Root nodule extensin - Pisum sativum
(Garden pea), partial (76%)
Length = 523
Score = 111 bits (56), Expect = 1e-23
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 9 tctaatggcttccttttcaatcgctcttgcattgtccataatgttattcagtttcccatc 68
||||||||||||| |||||||| | ||||||||| |||||||| ||||||||||||||||
Sbjct: 18 tctaatggcttccatttcaatcacccttgcattgaccataatgctattcagtttcccatc 77
Query: 69 tgaaatttcagcaaac 84
||||||||||||||||
Sbjct: 78 tgaaatttcagcaaac 93
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 310 ccagtttaccactctcctccaccacca 336
|||||||||||||||||||||||||||
Sbjct: 337 ccagtttaccactctcctccaccacca 363
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 529 tctcctccaccaccagttcacacttcccctc 559
||||||||||||||||||||||||| |||||
Sbjct: 391 tctcctccaccaccagttcacacttaccctc 421
Score = 52.0 bits (26), Expect = 8e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 526 cactctcctccaccaccagttcacacttcccctc 559
|||||||| ||||||||||||||||||| |||||
Sbjct: 439 cactctcccccaccaccagttcacacttaccctc 472