Miyakogusa Predicted Gene

Lj5g3v1699290.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1699290.1 CUFF.55827.1
         (350 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72291 weakly similar to UniRef100_UPI0000E24440 Clust...   632   0.0  

>gnl|LJGI|TC72291 weakly similar to UniRef100_UPI0000E24440 Cluster: PREDICTED:
           conserved nuclear protein NHN1 isoform 3; n=1; Pan
           troglodytes|Rep: PREDICTED: conserved nuclear protein
           NHN1 isoform 3 - Pan troglodytes, partial (4%)
          Length = 758

 Score =  632 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 32  agaaaattttcttgttttcatgtacaggggcaggttctctttggaaaagtggatctgaag 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agaaaattttcttgttttcatgtacaggggcaggttctctttggaaaagtggatctgaag 391

                                                                       
Query: 92  aacgcatccatgtcttctttattcttcacctcgaagaattggaaagcatcattgagcttc 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aacgcatccatgtcttctttattcttcacctcgaagaattggaaagcatcattgagcttc 331

                                                                       
Query: 152 ctcttacaggagacaaacgtcttcggcttcttcggcgccggcgggcaattcaggatcgcc 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctcttacaggagacaaacgtcttcggcttcttcggcgccggcgggcaattcaggatcgcc 271

                                                                       
Query: 212 ggaatcttgctctccttcgacgtcggcgtccggtagctctgttctgcgccttggatggtg 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggaatcttgctctccttcgacgtcggcgtccggtagctctgttctgcgccttggatggtg 211

                                                                       
Query: 272 ccaccgacggcggcatcgtcgtcaatttcgctgtccgggacgcttgctgtggcggcgata 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ccaccgacggcggcatcgtcgtcaatttcgctgtccgggacgcttgctgtggcggcgata 151

                              
Query: 332 ggggtggatggcgatgagg 350
           |||||||||||||||||||
Sbjct: 150 ggggtggatggcgatgagg 132