Miyakogusa Predicted Gene

Lj5g3v1699100.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v1699100.1 tr|B3RH40|B3RH40_MEDTR RPG OS=Medicago truncatula
PE=4 SV=1,61.29,0,coiled-coil,NULL; seg,NULL; NT-C2,EEIG1/EHBP1
N-terminal domain,CUFF.55795.1
         (3507 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP075752 similar to UniRef100_Q1G5F6 Cluster: NADH-ubiq...   452   e-126

>gnl|LJGI|BP075752 similar to UniRef100_Q1G5F6 Cluster: NADH-ubiquinone oxidoreductase
            chain 2; n=1; Jacana jacana|Rep: NADH-ubiquinone, partial
            (3%)
          Length = 481

 Score =  452 bits (228), Expect = e-126
 Identities = 311/332 (93%), Gaps = 5/332 (1%)
 Strand = Plus / Minus

                                                                        
Query: 3180 gcgctgtgaatttgagtttaagaagaaaattcttcagctggaatgggatataaaagtaaa 3239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gcgctgtgaatttgagtttaagaagaaaattcttcagctggaatgggatataaaagtaaa 422

                                                                        
Query: 3240 agaagcttcttgtgtcaacaatgctcagttgaggtatgaagttgcccaaatgacaagaga 3299
            |||||||||||||||| || |||||||||||||||||||| |||||| || | |||||||
Sbjct: 421  agaagcttcttgtgtctaccatgctcagttgaggtatgaatttgccccaacgccaagaga 362

                                                                        
Query: 3300 -aaatggtgagctacataggaagaaagatgctcttcaacaagagt-gtgaagagtgccag 3357
             ||||||||||||||||||||||||||||||||||| ||| || | ||||||||||||||
Sbjct: 361  caaatggtgagctacataggaagaaagatgctcttctaca-gactcgtgaagagtgccag 303

                                                                        
Query: 3358 aagaaagttaaagctcttgaagaaaagctgaaacaaaaagatgcagaacaagaccaatac 3417
            ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 302  aagcaagttaaagctcttgaagaaaagctgaaaccaaaagatgcagaaccagacccatac 243

                                                                        
Query: 3418 attgctaaagattgtagtacttctactgcccagaatgatttgaagctcttcc-atgaaga 3476
             |||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct: 242  cttgctaaagattgtagtacttctactgcccagcatgagttgaagctcttcctatgaaga 183

                                            
Query: 3477 agat-aatcgcaggagtatcaaatccagttag 3507
            |||| ||||||||||||||||||||| |||||
Sbjct: 182  agataaatcgcaggagtatcaaatcccgttag 151