Miyakogusa Predicted Gene
- Lj5g3v1699090.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1699090.1 tr|G8A1I5|G8A1I5_MEDTR Protein neuralized
OS=Medicago truncatula GN=MTR_121s0017 PE=4 SV=1,87.69,0,seg,NULL;
zf-C3HC4_3,NULL; ZF_RING_2,Zinc finger, RING-type; no description,Zinc
finger, RING/FYVE/P,CUFF.55799.1
(2565 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76383 similar to UniRef100_UPI0000196BA3 Cluster: pro... 864 0.0
gnl|LJGI|TC70962 homologue to UniRef100_A7PHV4 Cluster: Chromoso... 658 0.0
gnl|LJGI|DC592884 weakly similar to UniRef100_Q7ZUU5 Cluster: Sm... 168 1e-40
gnl|LJGI|TC79563 similar to UniRef100_A7PHV4 Cluster: Chromosome... 76 1e-12
gnl|LJGI|TC78959 weakly similar to UniRef100_A7PQN5 Cluster: Chr... 70 8e-11
>gnl|LJGI|TC76383 similar to UniRef100_UPI0000196BA3 Cluster: protein binding / zinc
ion binding; n=1; Arabidopsis thaliana|Rep: protein
binding / zinc ion binding - Arabidopsis thaliana,
partial (13%)
Length = 437
Score = 864 bits (436), Expect = 0.0
Identities = 436/436 (100%)
Strand = Plus / Plus
Query: 1618 agggcagttagagattggccactggaaacttccagagatcaagcgggcgaagatcctcct 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agggcagttagagattggccactggaaacttccagagatcaagcgggcgaagatcctcct 61
Query: 1678 catccacgtgaacctcaaagagtttggcatgaggatagcacaagggaagctgttggtaat 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 catccacgtgaacctcaaagagtttggcatgaggatagcacaagggaagctgttggtaat 121
Query: 1738 tggtctgaaggaccttccggagcttcaaggaatcgccgtggtgttccctttagaaggttc 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tggtctgaaggaccttccggagcttcaaggaatcgccgtggtgttccctttagaaggttc 181
Query: 1798 aatagatttcatccccctgatgatgacaatgtgtacagtatggagcttagagaacttctg 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aatagatttcatccccctgatgatgacaatgtgtacagtatggagcttagagaacttctg 241
Query: 1858 agcaggagaagtgtttctaaccttcttcgcagtggtttccgtgaaagtctggatcaacta 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agcaggagaagtgtttctaaccttcttcgcagtggtttccgtgaaagtctggatcaacta 301
Query: 1918 atacagtcatatgttgaaaggcaaggtcgtgcaccaattgactgggatttgcatcggaac 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atacagtcatatgttgaaaggcaaggtcgtgcaccaattgactgggatttgcatcggaac 361
Query: 1978 ttgccaacaccgacccctgcctcacctgaacgggaacctgatcagcagggtgatgaacat 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgccaacaccgacccctgcctcacctgaacgggaacctgatcagcagggtgatgaacat 421
Query: 2038 aatgagggtcagcatg 2053
||||||||||||||||
Sbjct: 422 aatgagggtcagcatg 437
>gnl|LJGI|TC70962 homologue to UniRef100_A7PHV4 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 553
Score = 658 bits (332), Expect = 0.0
Identities = 337/339 (99%)
Strand = Plus / Plus
Query: 2227 gggatgaatcacatgcagaggatgttggaggcctgcatggacatgcaactggagttgcag 2286
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gggatgaatcacatgcagaggatgttggagncctgcatggacatgcaactggagttgcag 60
Query: 2287 cgttctgtaagacaggaggtctctgcagctcttaaccgctcagctggtgaaaatggatcg 2346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgttctgtaagacaggaggtctctgcagctcttaaccgctcagctggtgaaaatggatcg 120
Query: 2347 gttgctgagacatctgatgatgggtctaaatgggggcatgtgaaaaaaggaacttgctgt 2406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttgctgagacatctgatgatgggtctaaatgggggcatgtgaaaaaaggaacttgctgt 180
Query: 2407 gtttgttgtgatagccatattgattcgcttttgtacagatgcggacacatgtgcacgtgt 2466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtttgttgtgatagccatattgattcgcttttgtacagatgcggacacatgtgcacgtgt 240
Query: 2467 tcaaaatgtgccaatgagttaattcgtggaggcggtaagtgtcctttatgccgagcacca 2526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaaaatgtgccaatgagttaattcgtggaggcggtaagtgtcctttatgccgagcaccc 300
Query: 2527 attgttgaggtggtccgagcatattccatactgtaaaaa 2565
|||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attgttgaggtggtccgagcatattccatactgtaaaaa 339
>gnl|LJGI|DC592884 weakly similar to UniRef100_Q7ZUU5 Cluster: Smarcc1 protein; n=1;
Danio rerio|Rep: Smarcc1 protein - Danio rerio
(Zebrafish) (Brachydanio rerio), partial (3%)
Length = 592
Score = 168 bits (85), Expect = 1e-40
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 atgacagatattcagccgctacagcagaagcctgaacctgctgatgcccatgccgaattt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 atgacagatattcagccgctacagcagaagcctgaacctgctgatgcccacgccgaattt 563
Query: 61 gagcgcgggctggaggagtttatgcgcgg 89
|||||||||||||||||||||||||||||
Sbjct: 564 gagcgcgggctggaggagtttatgcgcgg 592
>gnl|LJGI|TC79563 similar to UniRef100_A7PHV4 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 505
Score = 75.8 bits (38), Expect = 1e-12
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 2385 tgtgaaaaaaggaacttgctgtgtttgttgtgatagccatattgattcgcttttgtacag 2444
||||| ||||||| |||||||||||| || || |||||||||||||| | ||||||||
Sbjct: 131 tgtgagaaaaggactttgctgtgtttgctgcgaaagccatattgattctttgttgtacag 190
Query: 2445 atgcggacacatgtgcacgtgttcaaaatgtgccaatgagtt 2486
||| || ||| |||| || ||||| |||||||| ||||||||
Sbjct: 191 atgtgggcacttgtgtacatgttccaaatgtgctaatgagtt 232
>gnl|LJGI|TC78959 weakly similar to UniRef100_A7PQN5 Cluster: Chromosome chr6
scaffold_25, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_25, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 723
Score = 69.9 bits (35), Expect = 8e-11
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 1813 cctgatgatgacaatgtgtacagtatggagcttagagaacttctgagcaggagaagtgtt 1872
|||||||||||| ||||||||||| | || || || |||||||| | |||||||| ||
Sbjct: 324 cctgatgatgaccatgtgtacagtgttgaactcagggaacttcttaataggagaagagtc 383
Query: 1873 tctaaccttcttcgcagtggtttccgtgaaagtctggatcaactaatacagtcatatgtt 1932
||||| || |||| |||| ||||||||| ||||| || || | |||| |||||||||
Sbjct: 384 tctaatctccttcacagtagtttccgtgcgagtcttgaccagttggtacaatcatatgtt 443
Query: 1933 gaaaggcaagg 1943
|||||||||||
Sbjct: 444 gaaaggcaagg 454