Miyakogusa Predicted Gene
- Lj5g3v1698940.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1698940.1 Non Chatacterized Hit- tr|B7FF73|B7FF73_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,87.74,0,RAB,NULL; Ras subfamily of RAS small GTPases,Small GTPase
superfamily, Ras type; Rab subfamily of sm,CUFF.55785.1
(639 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58877 homologue to UniRef100_A7NSN5 Cluster: Chromoso... 72 5e-12
gnl|LJGI|TC70916 UniRef100_Q40207 Cluster: RAB1Y; n=1; Lotus jap... 66 3e-10
gnl|LJGI|TC57210 UniRef100_Q40207 Cluster: RAB1Y; n=1; Lotus jap... 66 3e-10
>gnl|LJGI|TC58877 homologue to UniRef100_A7NSN5 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 885
Score = 71.9 bits (36), Expect = 5e-12
Identities = 168/212 (79%)
Strand = Plus / Plus
Query: 205 atttgggacacagctggacaagagaggtttggaacagtaataagctcttattacagaggt 264
|||||||||||||||||||| || |||||| ||||| | | || || ||||| |||||
Sbjct: 329 atttgggacacagctggacaggaaaggtttagaacacttactagttcatattatagagga 388
Query: 265 gcacatgggatcattctcgtctatgatgtgacacgacgcgagacatttacaaacgttgtg 324
||||| || || ||| | || |||||||| || ||||| ||||| |||||||| |
Sbjct: 389 gcacaaggaataattatggtatatgatgtaactcgacgggagacctttacaaatctatct 448
Query: 325 gaaatatgggcaaaagaggttgatctgtactccactaatcatgattgcatcaaaattctt 384
|| |||||||| ||||| ||||||| ||||| || ||||| || || ||||| || |||
Sbjct: 449 gatatatgggccaaagaaattgatctatactctacaaatcaagactgtatcaagatgctt 508
Query: 385 gttggcaataaggtggataaggaaagtgaaag 416
|| || || || || |||||||||||||||||
Sbjct: 509 gtaggaaacaaagttgataaggaaagtgaaag 540
>gnl|LJGI|TC70916 UniRef100_Q40207 Cluster: RAB1Y; n=1; Lotus japonicus|Rep: RAB1Y -
Lotus japonicus, partial (98%)
Length = 791
Score = 65.9 bits (33), Expect = 3e-10
Identities = 147/185 (79%)
Strand = Plus / Plus
Query: 205 atttgggacacagctggacaagagaggtttggaacagtaataagctcttattacagaggt 264
|||||||| || ||||| |||||||| ||| ||||| | | ||||||||| || |||||
Sbjct: 305 atttgggatactgctggccaagagagatttagaacacttacaagctcttactatagaggg 364
Query: 265 gcacatgggatcattctcgtctatgatgtgacacgacgcgagacatttacaaacgttgtg 324
||||| || ||||| | || |||||||| || ||||| || ||||||||||| ||
Sbjct: 365 gcacaaggaatcatcatggtttatgatgtaacccgacgagatacatttacaaatctttct 424
Query: 325 gaaatatgggcaaaagaggttgatctgtactccactaatcatgattgcatcaaaattctt 384
|||||||||||||| || | ||||| || || || ||||| || |||||||| || |||
Sbjct: 425 gaaatatgggcaaaggaaatagatctttattcaacaaatcaagactgcatcaagatgctt 484
Query: 385 gttgg 389
|||||
Sbjct: 485 gttgg 489
>gnl|LJGI|TC57210 UniRef100_Q40207 Cluster: RAB1Y; n=1; Lotus japonicus|Rep: RAB1Y -
Lotus japonicus, complete
Length = 985
Score = 65.9 bits (33), Expect = 3e-10
Identities = 147/185 (79%)
Strand = Plus / Plus
Query: 205 atttgggacacagctggacaagagaggtttggaacagtaataagctcttattacagaggt 264
|||||||| || ||||| |||||||| ||| ||||| | | ||||||||| || |||||
Sbjct: 244 atttgggatactgctggccaagagagatttagaacacttacaagctcttactatagaggg 303
Query: 265 gcacatgggatcattctcgtctatgatgtgacacgacgcgagacatttacaaacgttgtg 324
||||| || ||||| | || |||||||| || ||||| || ||||||||||| ||
Sbjct: 304 gcacaaggaatcatcatggtttatgatgtaacccgacgagatacatttacaaatctttct 363
Query: 325 gaaatatgggcaaaagaggttgatctgtactccactaatcatgattgcatcaaaattctt 384
|||||||||||||| || | ||||| || || || ||||| || |||||||| || |||
Sbjct: 364 gaaatatgggcaaaggaaatagatctttattcaacaaatcaagactgcatcaagatgctt 423
Query: 385 gttgg 389
|||||
Sbjct: 424 gttgg 428