Miyakogusa Predicted Gene
- Lj5g3v1698890.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v1698890.1 Non Chatacterized Hit- tr|B9T431|B9T431_RICCO
Zinc finger protein, putative OS=Ricinus communis
GN=R,34.62,1e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; zinc finger,Zinc finger, C2H2-like; zf-C2,CUFF.55781.1
(1060 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78216 homologue to UniRef100_A7PQP3 Cluster: Chromoso... 82 8e-15
gnl|LJGI|TC75956 similar to UniRef100_A7QJE2 Cluster: Chromosome... 72 8e-12
gnl|LJGI|TC58649 similar to UniRef100_A7NZ63 Cluster: Chromosome... 64 2e-09
gnl|LJGI|BP051859 similar to UniRef100_A7PQP3 Cluster: Chromosom... 52 7e-06
>gnl|LJGI|TC78216 homologue to UniRef100_A7PQP3 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 1187
Score = 81.8 bits (41), Expect = 8e-15
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 439 ttctatgtttatgaatgcaagacatgtaacaggacattcccttcatttcaagcacttggt 498
||||| |||||||| ||||| ||||| ||| | ||||||||||| |||||||| || |||
Sbjct: 438 ttctacgtttatgagtgcaaaacatgcaaccgaacattcccttcgtttcaagcgctgggt 497
Query: 499 ggacacagggctagtcacaagaagcctaa 527
|| ||||| || |||||||||||||||||
Sbjct: 498 gggcacagagccagtcacaagaagcctaa 526
>gnl|LJGI|TC75956 similar to UniRef100_A7QJE2 Cluster: Chromosome chr8 scaffold_106,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_106, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 987
Score = 71.9 bits (36), Expect = 8e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 273 agaagaagaggaggacatggccaattgcttgatccttctggctcaagg 320
||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 230 agaagaagaggaggacatggccaattgtttgattcttttggctcaagg 277
Score = 65.9 bits (33), Expect = 5e-10
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 446 tttatgaatgcaagacatgtaacaggacattcccttcatttcaagcacttggtggacaca 505
||||||| ||||||||||||||||| || | ||||||||||||||||||||||| |
Sbjct: 370 tttatgagtgcaagacatgtaacagatgtttttcctcatttcaagcacttggtggacata 429
Query: 506 gggctagtcacaagaagcctaaggc 530
| || ||||||||||| | ||||||
Sbjct: 430 gagcaagtcacaagaaacttaaggc 454
>gnl|LJGI|TC58649 similar to UniRef100_A7NZ63 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (53%)
Length = 767
Score = 63.9 bits (32), Expect = 2e-09
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 454 tgcaagacatgtaacaggacattcccttcatttcaagcacttggtggacacagggctagt 513
||||||||||||||| | | |||| | ||||| |||||||||||||| ||||| |||||
Sbjct: 205 tgcaagacatgtaaccgcaaattctcgtcattccaagcacttggtggccacagagctagc 264
Query: 514 cacaagaa 521
||||||||
Sbjct: 265 cacaagaa 272
>gnl|LJGI|BP051859 similar to UniRef100_A7PQP3 Cluster: Chromosome chr6 scaffold_25,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_25, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 566
Score = 52.0 bits (26), Expect = 7e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 280 gaggaggacatggccaattgcttgatccttctggctcaagga 321
||||| |||||||| |||||||||||||| || |||||||||
Sbjct: 429 gaggaagacatggctaattgcttgatcctccttgctcaagga 470